libStatGen Software  1
Constant.h
1 /*
2  * Copyright (C) 2010 Regents of the University of Michigan
3  *
4  * This program is free software: you can redistribute it and/or modify
5  * it under the terms of the GNU General Public License as published by
6  * the Free Software Foundation, either version 3 of the License, or
7  * (at your option) any later version.
8  *
9  * This program is distributed in the hope that it will be useful,
10  * but WITHOUT ANY WARRANTY; without even the implied warranty of
11  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12  * GNU General Public License for more details.
13  *
14  * You should have received a copy of the GNU General Public License
15  * along with this program. If not, see <http://www.gnu.org/licenses/>.
16  */
17 
18 #ifndef _CONSTANT_H_
19 #define _CONSTANT_H_
20 
21 #define COMPAREFUNC (int (*)(const void *, const void *))
22 
23 #define BUFSIZE 1024
24 #define FILENAMELEN 100
25 #define IDLEN 20
26 
27 #define SEPARATORS " \t\n\r\f/"
28 #define WHITESPACE " \t\n\r\f"
29 
30 #define SWTABLESKIP 9
31 #define SWTABLEMAX 10000
32 
33 #define _NAN_ ((double) (6.66666e-66))
34 
35 #define QTDTDATA "qtdt.dat"
36 #define QTDTPED "qtdt.ped"
37 #define QTDTIBD "qtdt.ibd"
38 #define QTDTRAW "regress.tbl"
39 #define GENIHDATAIN "genih.dat"
40 
41 #ifndef _WIN32
42 #define stricmp strcasecmp
43 #endif
44 
45 // Constants for older haplotype handling programs
46 // Constants for HAPLOXT
47 #define XT_MAX_ALLELES 50 // Maximum alleles for crosstabulation
48 #define XT_VECTORSIZE 10000 // Total haplotypes in population
49 #define XT_POOLTRESH 7 // Threshold for pooling rare alleles
50 // Simwalk Haplotype Vectors
51 #define HV_MAXSIZE 100 // Haplotypes in single SimWalk pedigree
52 #define HV_INFOTRESH 75 // Percentage of loci typed
53 #define HV_STATELENGTH 100 // Markers per haplotype
54 #define HV_SKIPLINES 4 // lines to skip at bottom of family tree
55 // Simwalk Summary Files
56 #define HT_TABLE_SIZE 1000
57 #define HT_SKIP_LINES 9
58 
59 #endif
60