libStatGen Software
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This is the complete list of members for PedigreeDescription, including all inherited members.
AddAffectionColumn(const char *affectionName) (defined in PedigreeDescription) | PedigreeDescription | |
AddCovariateColumn(const char *covariateName) (defined in PedigreeDescription) | PedigreeDescription | |
AddMarkerColumn(const char *markerName) (defined in PedigreeDescription) | PedigreeDescription | |
AddSkippedColumn() (defined in PedigreeDescription) | PedigreeDescription | |
AddStringColumn(const char *stringName) (defined in PedigreeDescription) | PedigreeDescription | |
AddTraitColumn(const char *traitName) (defined in PedigreeDescription) | PedigreeDescription | |
AddZygosityColumn() (defined in PedigreeDescription) | PedigreeDescription | |
affectionCount (defined in PedigreeGlobals) | PedigreeGlobals | static |
affectionLookup (defined in PedigreeGlobals) | PedigreeGlobals | static |
affectionNames (defined in PedigreeGlobals) | PedigreeGlobals | static |
AlleleFrequenciesAvailable() (defined in PedigreeGlobals) | PedigreeGlobals | static |
chromosomeX (defined in PedigreeGlobals) | PedigreeGlobals | static |
columnCount (defined in PedigreeDescription) | PedigreeDescription | |
columnHash (defined in PedigreeDescription) | PedigreeDescription | |
columns (defined in PedigreeDescription) | PedigreeDescription | |
ColumnSummary(String &string) (defined in PedigreeDescription) | PedigreeDescription | |
CountTextColumns() (defined in PedigreeDescription) | PedigreeDescription | |
covariateCount (defined in PedigreeGlobals) | PedigreeGlobals | static |
covariateLookup (defined in PedigreeGlobals) | PedigreeGlobals | static |
covariateNames (defined in PedigreeGlobals) | PedigreeGlobals | static |
filename (defined in PedigreeDescription) | PedigreeDescription | |
FlagMissingMarkers(IntArray &missingMarkers) (defined in PedigreeGlobals) | PedigreeGlobals | static |
GetAffectionID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static |
GetCovariateID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static |
GetMarkerID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static |
GetMarkerInfo(String &name) (defined in PedigreeGlobals) | PedigreeGlobals | static |
GetMarkerInfo(int marker) (defined in PedigreeGlobals) | PedigreeGlobals | static |
GetOrderedMarkers(IntArray &markers) (defined in PedigreeGlobals) | PedigreeGlobals | static |
GetStringID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static |
GetTraitID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static |
GrowMarkerInfo() (defined in PedigreeGlobals) | PedigreeGlobals | static |
Load(IFILE &Input, bool warnIfLinkage=false) (defined in PedigreeDescription) | PedigreeDescription | |
Load(const char *filename, bool warnIfLinkage=false) (defined in PedigreeDescription) | PedigreeDescription | |
LoadAllele(int marker, String &label) (defined in PedigreeGlobals) | PedigreeGlobals | static |
LoadAllele(MarkerInfo *info, String &label) (defined in PedigreeGlobals) | PedigreeGlobals | static |
LoadAlleleFrequencies(const char *filename, bool required=false) (defined in PedigreeGlobals) | PedigreeGlobals | static |
LoadAlleleFrequencies(IFILE &file) (defined in PedigreeGlobals) | PedigreeGlobals | static |
LoadBasepairMap(const char *filename) (defined in PedigreeGlobals) | PedigreeGlobals | static |
LoadBasepairMap(IFILE &file) (defined in PedigreeGlobals) | PedigreeGlobals | static |
LoadLinkageDataFile(IFILE &input) (defined in PedigreeDescription) | PedigreeDescription | |
LoadLinkageDataFile(const char *filename) (defined in PedigreeDescription) | PedigreeDescription | |
LoadMap(IFILE &Input) (defined in PedigreeDescription) | PedigreeDescription | |
LoadMap(const char *filename) (defined in PedigreeDescription) | PedigreeDescription | |
LoadMarkerMap(const char *filename, bool filter=false) (defined in PedigreeGlobals) | PedigreeGlobals | static |
LoadMarkerMap(IFILE &file, bool filter=false) (defined in PedigreeGlobals) | PedigreeGlobals | static |
LoadMendelDataFile(IFILE &input) (defined in PedigreeDescription) | PedigreeDescription | |
LoadMendelDataFile(const char *filename) (defined in PedigreeDescription) | PedigreeDescription | |
LookupAffection(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inlinestatic |
LookupCovariate(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inlinestatic |
LookupMarker(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inlinestatic |
LookupString(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inlinestatic |
LookupTrait(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inlinestatic |
markerCount (defined in PedigreeGlobals) | PedigreeGlobals | static |
markerInfo (defined in PedigreeGlobals) | PedigreeGlobals | static |
markerInfoByInteger (defined in PedigreeGlobals) | PedigreeGlobals | static |
markerInfoByName (defined in PedigreeGlobals) | PedigreeGlobals | static |
markerInfoCount (defined in PedigreeGlobals) | PedigreeGlobals | static |
markerInfoSize (defined in PedigreeGlobals) | PedigreeGlobals | static |
markerLookup (defined in PedigreeGlobals) | PedigreeGlobals | static |
markerNames (defined in PedigreeGlobals) | PedigreeGlobals | static |
MarkerPositionsAvailable() (defined in PedigreeGlobals) | PedigreeGlobals | static |
mendelFormat (defined in PedigreeDescription) | PedigreeDescription | |
operator=(PedigreeDescription &rhs) (defined in PedigreeDescription) | PedigreeDescription | |
PedigreeDescription() (defined in PedigreeDescription) | PedigreeDescription | |
PedigreeGlobals() (defined in PedigreeGlobals) | PedigreeGlobals | inline |
sexSpecificMap (defined in PedigreeGlobals) | PedigreeGlobals | static |
SortMarkersInMapOrder(IntArray &markers, int chromosome=-1) (defined in PedigreeGlobals) | PedigreeGlobals | static |
stringCount (defined in PedigreeGlobals) | PedigreeGlobals | static |
stringLookup (defined in PedigreeGlobals) | PedigreeGlobals | static |
stringNames (defined in PedigreeGlobals) | PedigreeGlobals | static |
traitCount (defined in PedigreeGlobals) | PedigreeGlobals | static |
traitLookup (defined in PedigreeGlobals) | PedigreeGlobals | static |
traitNames (defined in PedigreeGlobals) | PedigreeGlobals | static |
VerifySexSpecificOrder() (defined in PedigreeGlobals) | PedigreeGlobals | static |
WriteFreqFile(const char *filename, bool old_format=false) (defined in PedigreeGlobals) | PedigreeGlobals | static |
WriteFreqFile(FILE *file, bool old_format=false) (defined in PedigreeGlobals) | PedigreeGlobals | static |
WriteMapFile(const char *filename) (defined in PedigreeGlobals) | PedigreeGlobals | static |
WriteMapFile(FILE *file) (defined in PedigreeGlobals) | PedigreeGlobals | static |
~PedigreeDescription() (defined in PedigreeDescription) | PedigreeDescription | |
~PedigreeGlobals() (defined in PedigreeGlobals) | PedigreeGlobals |