libStatGen Software  1
PedigreeAlleleFreq.h
1 /*
2  * Copyright (C) 2010 Regents of the University of Michigan
3  *
4  * This program is free software: you can redistribute it and/or modify
5  * it under the terms of the GNU General Public License as published by
6  * the Free Software Foundation, either version 3 of the License, or
7  * (at your option) any later version.
8  *
9  * This program is distributed in the hope that it will be useful,
10  * but WITHOUT ANY WARRANTY; without even the implied warranty of
11  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12  * GNU General Public License for more details.
13  *
14  * You should have received a copy of the GNU General Public License
15  * along with this program. If not, see <http://www.gnu.org/licenses/>.
16  */
17 
18 #ifndef __ALLELEFREQUENCIES_H__
19 #define __ALLELEFREQUENCIES_H__
20 
21 #include "Pedigree.h"
22 
23 int CountAlleles(Pedigree & ped, int marker);
24 void LumpAlleles(Pedigree & ped, int marker, double threshold, bool reorder);
25 
26 #define FREQ_ALL 0
27 #define FREQ_FOUNDERS 1
28 #define FREQ_EQUAL 2
29 
30 // Returns true if frequencies estimated, false if previous information okay
31 bool EstimateFrequencies(Pedigree & ped, int marker, int estimator);
32 
33 #endif
34 
35