set today=`date +%Y-%m-%d`
set predir=stanford-tregex-$today
set dir=/u/nlp/distrib/$predir
set classjar=$dir/stanford-tregex-${today}.jar
set srcjar=$dir/stanford-tregex-src-${today}.jar
set srczip=$dir/stanford-tregex-src-${today}.zip
set doczip=$dir/stanford-tregex-doc-${today}.zip

set package_name=tregex

if ( ! $?JAVANLP_HOME ) then

setenv CLASSPATH $JAVANLP_HOME/projects/core/classes


rm -rf $dir
mkdir $dir





perl $JAVANLP_HOME/bin/gen-dependencies.pl -depdump $dir/depdump -classdir $JAVANLP_HOME/projects/core/classes -srcdir $JAVANLP_HOME/projects/core/src -srcjar $srcjar -manifest $JAVANLP_HOME/projects/core/src/edu/stanford/nlp/trees/tregex/gui/tregex-manifest.txt -extrasourcefiles edu/stanford/nlp/trees/tregex/package.html,edu/stanford/nlp/trees/tregex/tsurgeon/package.html,edu/stanford/nlp/trees/tregex/gui/tregex-manifest.txt,edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonParser.jjt,edu/stanford/nlp/trees/tregex/TregexParser.jj -classjar $classjar edu.stanford.nlp.semgrex.SemgrexPattern edu.stanford.nlp.semgrex.SemgrexMatcher edu.stanford.nlp.trees.tregex.TregexPattern edu.stanford.nlp.trees.tregex.TregexMatcher edu.stanford.nlp.trees.tregex.TregexPatternCompiler edu.stanford.nlp.trees.tregex.tsurgeon.Tsurgeon edu.stanford.nlp.trees.tregex.gui.TregexGUI edu.stanford.nlp.trees.tregex.gui.OSXAdapter edu.stanford.nlp.trees.TreeCoreAnnotations edu.stanford.nlp.ling.CoreAnnotations edu.stanford.nlp.ling.CoreAnnotations\\\$\\\* edu.stanford.nlp.trees.international.french.FrenchTreeReader edu.stanford.nlp.parser.KBestViterbiParser edu.stanford.nlp.parser.tools.PunctEquivalenceClasser edu.stanford.nlp.process.SerializableFunction

#####
EXTRACTING DEPENDENCIES
#####

Dependency dump file:
	/u/nlp/distrib/stanford-tregex-2012-05-22/depdump
Class directory:
	/user/horatio/releases/v1.3.2/projects/core/classes

java -classpath /u/nlp/java/liball/DependencyFinder.jar:/u/nlp/java/liball/jakarta-oro.jar:/u/nlp/java/liball/log4j.jar:/u/nlp/java/liball/xalan.jar:/u/nlp/java/liball/xercesImpl.jar:/u/nlp/java/liball/xml-apis.jar com.jeantessier.dependencyfinder.cli.DependencyExtractor -maximize -out /u/nlp/distrib/stanford-tregex-2012-05-22/depdump /user/horatio/releases/v1.3.2/projects/core/classes
log4j:WARN No appenders could be found for logger (com.jeantessier.classreader.TransientClassfileLoader).
log4j:WARN Please initialize the log4j system properly.

#####
GENERATING CLOSURE
#####
Dependency dump file:
	/u/nlp/distrib/stanford-tregex-2012-05-22/depdump

Starting classes:
	edu.stanford.nlp.semgrex.SemgrexPattern
	edu.stanford.nlp.semgrex.SemgrexMatcher
	edu.stanford.nlp.trees.tregex.TregexPattern
	edu.stanford.nlp.trees.tregex.TregexMatcher
	edu.stanford.nlp.trees.tregex.TregexPatternCompiler
	edu.stanford.nlp.trees.tregex.tsurgeon.Tsurgeon
	edu.stanford.nlp.trees.tregex.gui.TregexGUI
	edu.stanford.nlp.trees.tregex.gui.OSXAdapter
	edu.stanford.nlp.trees.TreeCoreAnnotations
	edu.stanford.nlp.ling.CoreAnnotations
	edu.stanford.nlp.ling.CoreAnnotations\$\*
	edu.stanford.nlp.trees.international.french.FrenchTreeReader
	edu.stanford.nlp.parser.KBestViterbiParser
	edu.stanford.nlp.parser.tools.PunctEquivalenceClasser
	edu.stanford.nlp.process.SerializableFunction

java -classpath /user/horatio/releases/v1.3.2/projects/core/classes edu.stanford.nlp.misc.DependencyAnalyzer /u/nlp/distrib/stanford-tregex-2012-05-22/depdump edu.stanford.nlp.semgrex.SemgrexPattern edu.stanford.nlp.semgrex.SemgrexMatcher edu.stanford.nlp.trees.tregex.TregexPattern edu.stanford.nlp.trees.tregex.TregexMatcher edu.stanford.nlp.trees.tregex.TregexPatternCompiler edu.stanford.nlp.trees.tregex.tsurgeon.Tsurgeon edu.stanford.nlp.trees.tregex.gui.TregexGUI edu.stanford.nlp.trees.tregex.gui.OSXAdapter edu.stanford.nlp.trees.TreeCoreAnnotations edu.stanford.nlp.ling.CoreAnnotations edu.stanford.nlp.ling.CoreAnnotations\$\* edu.stanford.nlp.trees.international.french.FrenchTreeReader edu.stanford.nlp.parser.KBestViterbiParser edu.stanford.nlp.parser.tools.PunctEquivalenceClasser edu.stanford.nlp.process.SerializableFunction

Class list:
	edu/stanford/nlp/graph/ConnectedComponents.class
	edu/stanford/nlp/graph/DijkstraShortestPath.class
	edu/stanford/nlp/graph/DirectedMultiGraph.class
	edu/stanford/nlp/graph/DirectedMultiGraph$1.class
	edu/stanford/nlp/graph/DirectedMultiGraph$2.class
	edu/stanford/nlp/graph/DirectedMultiGraph$3.class
	edu/stanford/nlp/graph/DirectedMultiGraph$EdgeIterator.class
	edu/stanford/nlp/graph/Graph.class
	edu/stanford/nlp/international/arabic/ArabicMorphoFeatureSpecification.class
	edu/stanford/nlp/international/arabic/ArabicMorphoFeatureSpecification$ArabicMorphoFeatures.class
	edu/stanford/nlp/international/arabic/process/ArabicLexer.class
	edu/stanford/nlp/international/arabic/process/ArabicTokenizer.class
	edu/stanford/nlp/international/arabic/process/ArabicTokenizer$ArabicTokenizerFactory.class
	edu/stanford/nlp/international/french/FrenchMorphoFeatureSpecification.class
	edu/stanford/nlp/international/morph/MorphoFeatureSpecification.class
	edu/stanford/nlp/international/morph/MorphoFeatureSpecification$MorphoFeatureType.class
	edu/stanford/nlp/international/morph/MorphoFeatures.class
	edu/stanford/nlp/io/BZip2PipedOutputStream.class
	edu/stanford/nlp/io/EncodingFileReader.class
	edu/stanford/nlp/io/EncodingPrintWriter.class
	edu/stanford/nlp/io/EncodingPrintWriter$err.class
	edu/stanford/nlp/io/EncodingPrintWriter$out.class
	edu/stanford/nlp/io/ExtensionFileFilter.class
	edu/stanford/nlp/io/IOUtils.class
	edu/stanford/nlp/io/IOUtils$1.class
	edu/stanford/nlp/io/IOUtils$1$1.class
	edu/stanford/nlp/io/IOUtils$2.class
	edu/stanford/nlp/io/IOUtils$2$1.class
	edu/stanford/nlp/io/Lexer.class
	edu/stanford/nlp/io/NumberRangesFileFilter.class
	edu/stanford/nlp/io/ReaderInputStream.class
	edu/stanford/nlp/io/RuntimeIOException.class
	edu/stanford/nlp/ling/AnnotationLookup.class
	edu/stanford/nlp/ling/AnnotationLookup$KeyLookup.class
	edu/stanford/nlp/ling/AnnotationLookup$KeyLookup$1.class
	edu/stanford/nlp/ling/CategoryWordTag.class
	edu/stanford/nlp/ling/CategoryWordTag$LabelFactoryHolder.class
	edu/stanford/nlp/ling/CategoryWordTagFactory.class
	edu/stanford/nlp/ling/CoreAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations.class
	edu/stanford/nlp/ling/CoreAnnotations$AbbrAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AbgeneAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AbstrAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AfterAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AnswerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AnswerObjectAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AntecedentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ArgDescendentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ArgumentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BagOfWordsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BeforeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BeginIndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BestCliquesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BestFullAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CalendarAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CategoryAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CategoryFunctionalTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CharAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CharacterOffsetBeginAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CharacterOffsetEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChineseCharAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChineseIsSegmentedAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChineseOrigSegAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChineseSegAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChunkAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLDepAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLDepParentIndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLDepTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLPredicateAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLSRLAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoarseTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CommonWordsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ContextsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CopyAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CostMagnificationAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CovertIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$D2_LBeginAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$D2_LEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$D2_LMiddleAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DayAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DependentsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DictAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DistSimAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DoAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DocDateAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DocIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DomainAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$EndIndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$EntityClassAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$EntityRuleAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$EntityTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$FeaturesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$FemaleGazAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$FirstChildAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ForcedSentenceEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$FreqAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GazAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GazetteerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GenericTokensAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GeniaAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GoldAnswerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GovernorAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GrandparentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$HaveAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$HeadWordStringAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$HeightAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IDFAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$INAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$InterpretationAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IsDateRangeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IsURLAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LBeginAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LMiddleAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LabelAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LabelWeightAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LastGazAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LastTaggedAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LeftChildrenNodeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LeftTermAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LemmaAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LengthAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MaleGazAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MarkingAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MonthAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MorphoCaseAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MorphoGenAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MorphoNumAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MorphoPersAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NERIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NamedEntityTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NeighborsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NormalizedNamedEntityTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NotAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumTxtSentencesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericCompositeObjectAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericCompositeTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericCompositeValueAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericObjectAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericValueAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumerizedTokensAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$OriginalAnswerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$OriginalCharAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$OriginalTextAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ParaPositionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ParagraphAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ParagraphsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ParentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PartOfSpeechAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PercentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PhraseWordsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PhraseWordsTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PolarityAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PositionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PossibleAnswersAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PredictedAnswerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PrevChildAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PriorAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ProjectedCategoryAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ProtoAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$RoleAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SRLIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SRLInstancesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SRL_ID.class
	edu/stanford/nlp/ling/CoreAnnotations$SectionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SemanticHeadTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SemanticHeadWordAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SemanticTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SemanticWordAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SentenceIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SentenceIndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SentencePositionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SentencesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ShapeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SpaceBeforeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SpanAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SpeakerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$StackedNamedEntityTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$StateAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$StemAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SubcategorizationAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TagLabelAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TextAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TokenBeginAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TokenEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TokensAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TopicAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TrueCaseAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TrueCaseTextAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TrueTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$UBlockAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$UTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$UnaryAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$UnknownAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$UtteranceAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ValueAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$VerbSenseAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$WebAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$WordFormAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$WordPositionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$WordSenseAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$WordnetSynAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$XmlContextAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$XmlElementAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$YearAnnotation.class
	edu/stanford/nlp/ling/CoreLabel.class
	edu/stanford/nlp/ling/CoreLabel$1.class
	edu/stanford/nlp/ling/CoreLabel$CoreLabelFactory.class
	edu/stanford/nlp/ling/CoreLabel$GenericAnnotation.class
	edu/stanford/nlp/ling/CyclicCoreLabel.class
	edu/stanford/nlp/ling/CyclicCoreLabel$1.class
	edu/stanford/nlp/ling/CyclicCoreLabel$2.class
	edu/stanford/nlp/ling/HasCategory.class
	edu/stanford/nlp/ling/HasContext.class
	edu/stanford/nlp/ling/HasIndex.class
	edu/stanford/nlp/ling/HasOffset.class
	edu/stanford/nlp/ling/HasTag.class
	edu/stanford/nlp/ling/HasWord.class
	edu/stanford/nlp/ling/IndexedWord.class
	edu/stanford/nlp/ling/IndexedWord$1.class
	edu/stanford/nlp/ling/Label.class
	edu/stanford/nlp/ling/LabelFactory.class
	edu/stanford/nlp/ling/LabeledWord.class
	edu/stanford/nlp/ling/LabeledWord$LabelFactoryHolder.class
	edu/stanford/nlp/ling/Sentence.class
	edu/stanford/nlp/ling/StringLabel.class
	edu/stanford/nlp/ling/StringLabel$StringLabelFactoryHolder.class
	edu/stanford/nlp/ling/StringLabelFactory.class
	edu/stanford/nlp/ling/TaggedWord.class
	edu/stanford/nlp/ling/TaggedWord$LabelFactoryHolder.class
	edu/stanford/nlp/ling/TaggedWordFactory.class
	edu/stanford/nlp/ling/ValueLabel.class
	edu/stanford/nlp/ling/Word.class
	edu/stanford/nlp/ling/Word$WordFactoryHolder.class
	edu/stanford/nlp/ling/WordFactory.class
	edu/stanford/nlp/ling/WordLemmaTag.class
	edu/stanford/nlp/ling/WordLemmaTagFactory.class
	edu/stanford/nlp/ling/WordTag.class
	edu/stanford/nlp/ling/WordTag$LabelFactoryHolder.class
	edu/stanford/nlp/ling/WordTagFactory.class
	edu/stanford/nlp/math/ArrayMath.class
	edu/stanford/nlp/math/SloppyMath.class
	edu/stanford/nlp/objectbank/IdentityFunction.class
	edu/stanford/nlp/objectbank/IteratorFromReaderFactory.class
	edu/stanford/nlp/objectbank/LineIterator.class
	edu/stanford/nlp/objectbank/LineIterator$LineIteratorFactory.class
	edu/stanford/nlp/objectbank/ObjectBank.class
	edu/stanford/nlp/objectbank/ObjectBank$OBIterator.class
	edu/stanford/nlp/objectbank/ReaderIteratorFactory.class
	edu/stanford/nlp/objectbank/ReaderIteratorFactory$ReaderIterator.class
	edu/stanford/nlp/objectbank/TokenizerFactory.class
	edu/stanford/nlp/parser/KBestViterbiParser.class
	edu/stanford/nlp/parser/Parser.class
	edu/stanford/nlp/parser/ViterbiParser.class
	edu/stanford/nlp/parser/lexparser/AbstractDependencyGrammar.class
	edu/stanford/nlp/parser/lexparser/AbstractTreeExtractor.class
	edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams.class
	edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams$1.class
	edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams$RemoveGFSubcategoryStripper.class
	edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams$SubcategoryStripper.class
	edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams$TypedDependencyTyper.class
	edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams$UnorderedTypedDependencyTyper.class
	edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams$UnorderedUntypedDependencyTyper.class
	edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams$UntypedDependencyTyper.class
	edu/stanford/nlp/parser/lexparser/BaseLexicon.class
	edu/stanford/nlp/parser/lexparser/BasicCategoryTagProjection.class
	edu/stanford/nlp/parser/lexparser/DependencyGrammar.class
	edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams.class
	edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams$1.class
	edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams$2.class
	edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams$EnglishSubcategoryStripper.class
	edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams$EnglishTest.class
	edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams$EnglishTrain.class
	edu/stanford/nlp/parser/lexparser/Extractor.class
	edu/stanford/nlp/parser/lexparser/IntDependency.class
	edu/stanford/nlp/parser/lexparser/IntTaggedWord.class
	edu/stanford/nlp/parser/lexparser/Lexicon.class
	edu/stanford/nlp/parser/lexparser/MLEDependencyGrammar.class
	edu/stanford/nlp/parser/lexparser/MLEDependencyGrammar$EndHead.class
	edu/stanford/nlp/parser/lexparser/MLEDependencyGrammarExtractor.class
	edu/stanford/nlp/parser/lexparser/Options.class
	edu/stanford/nlp/parser/lexparser/Options$LexOptions.class
	edu/stanford/nlp/parser/lexparser/TagProjection.class
	edu/stanford/nlp/parser/lexparser/TestOptions.class
	edu/stanford/nlp/parser/lexparser/TestTagProjection.class
	edu/stanford/nlp/parser/lexparser/TrainOptions.class
	edu/stanford/nlp/parser/lexparser/TreeCollinizer.class
	edu/stanford/nlp/parser/lexparser/TreebankLangParserParams.class
	edu/stanford/nlp/parser/lexparser/UnknownWordModel.class
	edu/stanford/nlp/parser/lexparser/UnknownWordModelTrainer.class
	edu/stanford/nlp/parser/metrics/AbstractEval.class
	edu/stanford/nlp/parser/tools/PunctEquivalenceClasser.class
	edu/stanford/nlp/parser/ui/TreeJPanel.class
	edu/stanford/nlp/parser/ui/TreeJPanel$1.class
	edu/stanford/nlp/parser/ui/TreeJPanel$WidthResult.class
	edu/stanford/nlp/process/AbstractTokenizer.class
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	edu/stanford/nlp/trees/international/pennchinese/NoEmptiesCTBTreeReaderFactory.class
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	edu/stanford/nlp/trees/tregex/gui/FilePanel$FileTreeCellRenderer.class
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	edu/stanford/nlp/trees/tregex/gui/FileTreeNode$FileTreeNodeListener.class
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	edu/stanford/nlp/util/logging/RedwoodConfiguration$9.class
	edu/stanford/nlp/util/logging/RedwoodPrintStream.class
	edu/stanford/nlp/util/logging/RedwoodPrintStream$1.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$1.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$ApproximateRepeatSemantics.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$ExactRepeatSemantics.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$PendingType.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$RepeatSemantics.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$RepeatedRecordInfo.class
	edu/stanford/nlp/util/logging/Style.class
	edu/stanford/nlp/util/logging/VisibilityHandler.class
	edu/stanford/nlp/util/logging/VisibilityHandler$1.class
	edu/stanford/nlp/util/logging/VisibilityHandler$State.class


#####
GENERATING JAR FILE
#####

JAR file:
	/u/nlp/distrib/stanford-tregex-2012-05-22/stanford-tregex-2012-05-22.jar
Root directory:
	/user/horatio/releases/v1.3.2/projects/core/classes

jar cfm /juicy/u44/u/nlp/distrib/stanford-tregex-2012-05-22/stanford-tregex-2012-05-22.jar /user/horatio/releases/v1.3.2/projects/core/src/edu/stanford/nlp/trees/tregex/gui/tregex-manifest.txt edu/stanford/nlp/graph/ConnectedComponents.class \
 edu/stanford/nlp/graph/DijkstraShortestPath.class \
 edu/stanford/nlp/graph/DirectedMultiGraph.class \
 edu/stanford/nlp/graph/DirectedMultiGraph\$1.class \
 edu/stanford/nlp/graph/DirectedMultiGraph\$2.class \
 edu/stanford/nlp/graph/DirectedMultiGraph\$3.class \
 edu/stanford/nlp/graph/DirectedMultiGraph\$EdgeIterator.class \
 edu/stanford/nlp/graph/Graph.class \
 edu/stanford/nlp/international/arabic/ArabicMorphoFeatureSpecification.class \
 edu/stanford/nlp/international/arabic/ArabicMorphoFeatureSpecification\$ArabicMorphoFeatures.class \
 edu/stanford/nlp/international/arabic/process/ArabicLexer.class \
 edu/stanford/nlp/international/arabic/process/ArabicTokenizer.class \
 edu/stanford/nlp/international/arabic/process/ArabicTokenizer\$ArabicTokenizerFactory.class \
 edu/stanford/nlp/international/french/FrenchMorphoFeatureSpecification.class \
 edu/stanford/nlp/international/morph/MorphoFeatureSpecification.class \
 edu/stanford/nlp/international/morph/MorphoFeatureSpecification\$MorphoFeatureType.class \
 edu/stanford/nlp/international/morph/MorphoFeatures.class \
 edu/stanford/nlp/io/BZip2PipedOutputStream.class \
 edu/stanford/nlp/io/EncodingFileReader.class \
 edu/stanford/nlp/io/EncodingPrintWriter.class \
 edu/stanford/nlp/io/EncodingPrintWriter\$err.class \
 edu/stanford/nlp/io/EncodingPrintWriter\$out.class \
 edu/stanford/nlp/io/ExtensionFileFilter.class \
 edu/stanford/nlp/io/IOUtils.class \
 edu/stanford/nlp/io/IOUtils\$1.class \
 edu/stanford/nlp/io/IOUtils\$1\$1.class \
 edu/stanford/nlp/io/IOUtils\$2.class \
 edu/stanford/nlp/io/IOUtils\$2\$1.class \
 edu/stanford/nlp/io/Lexer.class \
 edu/stanford/nlp/io/NumberRangesFileFilter.class \
 edu/stanford/nlp/io/ReaderInputStream.class \
 edu/stanford/nlp/io/RuntimeIOException.class \
 edu/stanford/nlp/ling/AnnotationLookup.class \
 edu/stanford/nlp/ling/AnnotationLookup\$KeyLookup.class \
 edu/stanford/nlp/ling/AnnotationLookup\$KeyLookup\$1.class \
 edu/stanford/nlp/ling/CategoryWordTag.class \
 edu/stanford/nlp/ling/CategoryWordTag\$LabelFactoryHolder.class \
 edu/stanford/nlp/ling/CategoryWordTagFactory.class \
 edu/stanford/nlp/ling/CoreAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AbbrAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AbgeneAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AbstrAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AfterAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AnswerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AnswerObjectAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AntecedentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ArgDescendentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ArgumentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BagOfWordsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BeforeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BeginIndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BestCliquesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BestFullAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CalendarAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CategoryAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CategoryFunctionalTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CharAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CharacterOffsetBeginAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CharacterOffsetEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChineseCharAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChineseIsSegmentedAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChineseOrigSegAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChineseSegAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChunkAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLDepAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLDepParentIndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLDepTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLPredicateAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLSRLAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoarseTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CommonWordsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ContextsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CopyAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CostMagnificationAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CovertIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$D2_LBeginAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$D2_LEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$D2_LMiddleAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DayAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DependentsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DictAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DistSimAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DoAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DocDateAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DocIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DomainAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$EndIndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$EntityClassAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$EntityRuleAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$EntityTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$FeaturesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$FemaleGazAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$FirstChildAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ForcedSentenceEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$FreqAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GazAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GazetteerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GenericTokensAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GeniaAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GoldAnswerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GovernorAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GrandparentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$HaveAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$HeadWordStringAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$HeightAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IDFAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$INAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$InterpretationAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IsDateRangeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IsURLAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LBeginAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LMiddleAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LabelAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LabelWeightAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LastGazAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LastTaggedAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LeftChildrenNodeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LeftTermAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LemmaAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LengthAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MaleGazAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MarkingAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MonthAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MorphoCaseAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MorphoGenAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MorphoNumAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MorphoPersAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NERIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NamedEntityTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NeighborsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NormalizedNamedEntityTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NotAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumTxtSentencesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericCompositeObjectAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericCompositeTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericCompositeValueAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericObjectAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericValueAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumerizedTokensAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$OriginalAnswerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$OriginalCharAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$OriginalTextAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ParaPositionAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ParagraphAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ParagraphsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ParentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PartOfSpeechAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PercentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PhraseWordsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PhraseWordsTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PolarityAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PositionAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PossibleAnswersAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PredictedAnswerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PrevChildAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PriorAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ProjectedCategoryAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ProtoAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$RoleAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SRLIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SRLInstancesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SRL_ID.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SectionAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SemanticHeadTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SemanticHeadWordAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SemanticTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SemanticWordAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SentenceIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SentenceIndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SentencePositionAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SentencesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ShapeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SpaceBeforeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SpanAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SpeakerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$StackedNamedEntityTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$StateAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$StemAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SubcategorizationAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TagLabelAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TextAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TokenBeginAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TokenEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TokensAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TopicAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TrueCaseAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TrueCaseTextAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TrueTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$UBlockAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$UTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$UnaryAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$UnknownAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$UtteranceAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ValueAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$VerbSenseAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$WebAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$WordFormAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$WordPositionAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$WordSenseAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$WordnetSynAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$XmlContextAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$XmlElementAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$YearAnnotation.class \
 edu/stanford/nlp/ling/CoreLabel.class \
 edu/stanford/nlp/ling/CoreLabel\$1.class \
 edu/stanford/nlp/ling/CoreLabel\$CoreLabelFactory.class \
 edu/stanford/nlp/ling/CoreLabel\$GenericAnnotation.class \
 edu/stanford/nlp/ling/CyclicCoreLabel.class \
 edu/stanford/nlp/ling/CyclicCoreLabel\$1.class \
 edu/stanford/nlp/ling/CyclicCoreLabel\$2.class \
 edu/stanford/nlp/ling/HasCategory.class \
 edu/stanford/nlp/ling/HasContext.class \
 edu/stanford/nlp/ling/HasIndex.class \
 edu/stanford/nlp/ling/HasOffset.class \
 edu/stanford/nlp/ling/HasTag.class \
 edu/stanford/nlp/ling/HasWord.class \
 edu/stanford/nlp/ling/IndexedWord.class \
 edu/stanford/nlp/ling/IndexedWord\$1.class \
 edu/stanford/nlp/ling/Label.class \
 edu/stanford/nlp/ling/LabelFactory.class \
 edu/stanford/nlp/ling/LabeledWord.class \
 edu/stanford/nlp/ling/LabeledWord\$LabelFactoryHolder.class \
 edu/stanford/nlp/ling/Sentence.class \
 edu/stanford/nlp/ling/StringLabel.class \
 edu/stanford/nlp/ling/StringLabel\$StringLabelFactoryHolder.class \
 edu/stanford/nlp/ling/StringLabelFactory.class \
 edu/stanford/nlp/ling/TaggedWord.class \
 edu/stanford/nlp/ling/TaggedWord\$LabelFactoryHolder.class \
 edu/stanford/nlp/ling/TaggedWordFactory.class \
 edu/stanford/nlp/ling/ValueLabel.class \
 edu/stanford/nlp/ling/Word.class \
 edu/stanford/nlp/ling/Word\$WordFactoryHolder.class \
 edu/stanford/nlp/ling/WordFactory.class \
 edu/stanford/nlp/ling/WordLemmaTag.class \
 edu/stanford/nlp/ling/WordLemmaTagFactory.class \
 edu/stanford/nlp/ling/WordTag.class \
 edu/stanford/nlp/ling/WordTag\$LabelFactoryHolder.class \
 edu/stanford/nlp/ling/WordTagFactory.class \
 edu/stanford/nlp/math/ArrayMath.class \
 edu/stanford/nlp/math/SloppyMath.class \
 edu/stanford/nlp/objectbank/IdentityFunction.class \
 edu/stanford/nlp/objectbank/IteratorFromReaderFactory.class \
 edu/stanford/nlp/objectbank/LineIterator.class \
 edu/stanford/nlp/objectbank/LineIterator\$LineIteratorFactory.class \
 edu/stanford/nlp/objectbank/ObjectBank.class \
 edu/stanford/nlp/objectbank/ObjectBank\$OBIterator.class \
 edu/stanford/nlp/objectbank/ReaderIteratorFactory.class \
 edu/stanford/nlp/objectbank/ReaderIteratorFactory\$ReaderIterator.class \
 edu/stanford/nlp/objectbank/TokenizerFactory.class \
 edu/stanford/nlp/parser/KBestViterbiParser.class \
 edu/stanford/nlp/parser/Parser.class \
 edu/stanford/nlp/parser/ViterbiParser.class \
 edu/stanford/nlp/parser/lexparser/AbstractDependencyGrammar.class \
 edu/stanford/nlp/parser/lexparser/AbstractTreeExtractor.class \
 edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams.class \
 edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams\$1.class \
 edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams\$RemoveGFSubcategoryStripper.class \
 edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams\$SubcategoryStripper.class \
 edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams\$TypedDependencyTyper.class \
 edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams\$UnorderedTypedDependencyTyper.class \
 edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams\$UnorderedUntypedDependencyTyper.class \
 edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams\$UntypedDependencyTyper.class \
 edu/stanford/nlp/parser/lexparser/BaseLexicon.class \
 edu/stanford/nlp/parser/lexparser/BasicCategoryTagProjection.class \
 edu/stanford/nlp/parser/lexparser/DependencyGrammar.class \
 edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams.class \
 edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams\$1.class \
 edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams\$2.class \
 edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams\$EnglishSubcategoryStripper.class \
 edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams\$EnglishTest.class \
 edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams\$EnglishTrain.class \
 edu/stanford/nlp/parser/lexparser/Extractor.class \
 edu/stanford/nlp/parser/lexparser/IntDependency.class \
 edu/stanford/nlp/parser/lexparser/IntTaggedWord.class \
 edu/stanford/nlp/parser/lexparser/Lexicon.class \
 edu/stanford/nlp/parser/lexparser/MLEDependencyGrammar.class \
 edu/stanford/nlp/parser/lexparser/MLEDependencyGrammar\$EndHead.class \
 edu/stanford/nlp/parser/lexparser/MLEDependencyGrammarExtractor.class \
 edu/stanford/nlp/parser/lexparser/Options.class \
 edu/stanford/nlp/parser/lexparser/Options\$LexOptions.class \
 edu/stanford/nlp/parser/lexparser/TagProjection.class \
 edu/stanford/nlp/parser/lexparser/TestOptions.class \
 edu/stanford/nlp/parser/lexparser/TestTagProjection.class \
 edu/stanford/nlp/parser/lexparser/TrainOptions.class \
 edu/stanford/nlp/parser/lexparser/TreeCollinizer.class \
 edu/stanford/nlp/parser/lexparser/TreebankLangParserParams.class \
 edu/stanford/nlp/parser/lexparser/UnknownWordModel.class \
 edu/stanford/nlp/parser/lexparser/UnknownWordModelTrainer.class \
 edu/stanford/nlp/parser/metrics/AbstractEval.class \
 edu/stanford/nlp/parser/tools/PunctEquivalenceClasser.class \
 edu/stanford/nlp/parser/ui/TreeJPanel.class \
 edu/stanford/nlp/parser/ui/TreeJPanel\$1.class \
 edu/stanford/nlp/parser/ui/TreeJPanel\$WidthResult.class \
 edu/stanford/nlp/process/AbstractTokenizer.class \
 edu/stanford/nlp/process/Americanize.class \
 edu/stanford/nlp/process/CoreLabelTokenFactory.class \
 edu/stanford/nlp/process/CoreTokenFactory.class \
 edu/stanford/nlp/process/JFlexDummyLexer.class \
 edu/stanford/nlp/process/LexedTokenFactory.class \
 edu/stanford/nlp/process/LexerTokenizer.class \
 edu/stanford/nlp/process/Morpha.class \
 edu/stanford/nlp/process/Morphology.class \
 edu/stanford/nlp/process/PTB2TextLexer.class \
 edu/stanford/nlp/process/PTBLexer.class \
 edu/stanford/nlp/process/PTBLexer\$1.class \
 edu/stanford/nlp/process/PTBLexer\$UntokenizableOptions.class \
 edu/stanford/nlp/process/PTBTokenizer.class \
 edu/stanford/nlp/process/PTBTokenizer\$1.class \
 edu/stanford/nlp/process/PTBTokenizer\$PTBTokenizerFactory.class \
 edu/stanford/nlp/process/SerializableFunction.class \
 edu/stanford/nlp/process/Tokenizer.class \
 edu/stanford/nlp/process/TokenizerAdapter.class \
 edu/stanford/nlp/process/WhitespaceLexer.class \
 edu/stanford/nlp/process/WhitespaceTokenizer.class \
 edu/stanford/nlp/process/WhitespaceTokenizer\$WhitespaceTokenizerFactory.class \
 edu/stanford/nlp/process/WordTokenFactory.class \
 edu/stanford/nlp/semgrex/Alignment.class \
 edu/stanford/nlp/semgrex/CoordinationPattern.class \
 edu/stanford/nlp/semgrex/CoordinationPattern\$CoordinationMatcher.class \
 edu/stanford/nlp/semgrex/GraphRelation.class \
 edu/stanford/nlp/semgrex/GraphRelation\$1.class \
 edu/stanford/nlp/semgrex/GraphRelation\$1\$1.class \
 edu/stanford/nlp/semgrex/GraphRelation\$2.class \
 edu/stanford/nlp/semgrex/GraphRelation\$3.class \
 edu/stanford/nlp/semgrex/GraphRelation\$3\$1.class \
 edu/stanford/nlp/semgrex/GraphRelation\$ALIGNMENT.class \
 edu/stanford/nlp/semgrex/GraphRelation\$ALIGNMENT\$1.class \
 edu/stanford/nlp/semgrex/GraphRelation\$DEPENDENT.class \
 edu/stanford/nlp/semgrex/GraphRelation\$DEPENDENT\$1.class \
 edu/stanford/nlp/semgrex/GraphRelation\$GOVERNER.class \
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 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$1.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$ApproximateRepeatSemantics.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$ExactRepeatSemantics.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$PendingType.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$RepeatSemantics.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$RepeatedRecordInfo.class \
 edu/stanford/nlp/util/logging/Style.class \
 edu/stanford/nlp/util/logging/VisibilityHandler.class \
 edu/stanford/nlp/util/logging/VisibilityHandler\$1.class \
 edu/stanford/nlp/util/logging/VisibilityHandler\$State.class

Source files:

	edu/stanford/nlp/graph/ConnectedComponents.java
	edu/stanford/nlp/graph/DijkstraShortestPath.java
	edu/stanford/nlp/graph/DirectedMultiGraph.java
	edu/stanford/nlp/graph/Graph.java
	edu/stanford/nlp/international/arabic/ArabicMorphoFeatureSpecification.java
	edu/stanford/nlp/international/arabic/process/ArabicLexer.java
	edu/stanford/nlp/international/arabic/process/ArabicTokenizer.java
	edu/stanford/nlp/international/french/FrenchMorphoFeatureSpecification.java
	edu/stanford/nlp/international/morph/MorphoFeatureSpecification.java
	edu/stanford/nlp/international/morph/MorphoFeatures.java
	edu/stanford/nlp/io/BZip2PipedOutputStream.java
	edu/stanford/nlp/io/EncodingFileReader.java
	edu/stanford/nlp/io/EncodingPrintWriter.java
	edu/stanford/nlp/io/ExtensionFileFilter.java
	edu/stanford/nlp/io/IOUtils.java
	edu/stanford/nlp/io/Lexer.java
	edu/stanford/nlp/io/NumberRangesFileFilter.java
	edu/stanford/nlp/io/ReaderInputStream.java
	edu/stanford/nlp/io/RuntimeIOException.java
	edu/stanford/nlp/ling/AnnotationLookup.java
	edu/stanford/nlp/ling/CategoryWordTag.java
	edu/stanford/nlp/ling/CategoryWordTagFactory.java
	edu/stanford/nlp/ling/CoreAnnotation.java
	edu/stanford/nlp/ling/CoreAnnotations.java
	edu/stanford/nlp/ling/CoreLabel.java
	edu/stanford/nlp/ling/CyclicCoreLabel.java
	edu/stanford/nlp/ling/HasCategory.java
	edu/stanford/nlp/ling/HasContext.java
	edu/stanford/nlp/ling/HasIndex.java
	edu/stanford/nlp/ling/HasOffset.java
	edu/stanford/nlp/ling/HasTag.java
	edu/stanford/nlp/ling/HasWord.java
	edu/stanford/nlp/ling/IndexedWord.java
	edu/stanford/nlp/ling/Label.java
	edu/stanford/nlp/ling/LabelFactory.java
	edu/stanford/nlp/ling/LabeledWord.java
	edu/stanford/nlp/ling/Sentence.java
	edu/stanford/nlp/ling/StringLabel.java
	edu/stanford/nlp/ling/StringLabelFactory.java
	edu/stanford/nlp/ling/TaggedWord.java
	edu/stanford/nlp/ling/TaggedWordFactory.java
	edu/stanford/nlp/ling/ValueLabel.java
	edu/stanford/nlp/ling/Word.java
	edu/stanford/nlp/ling/WordFactory.java
	edu/stanford/nlp/ling/WordLemmaTag.java
	edu/stanford/nlp/ling/WordLemmaTagFactory.java
	edu/stanford/nlp/ling/WordTag.java
	edu/stanford/nlp/ling/WordTagFactory.java
	edu/stanford/nlp/math/ArrayMath.java
	edu/stanford/nlp/math/SloppyMath.java
	edu/stanford/nlp/objectbank/IdentityFunction.java
	edu/stanford/nlp/objectbank/IteratorFromReaderFactory.java
	edu/stanford/nlp/objectbank/LineIterator.java
	edu/stanford/nlp/objectbank/ObjectBank.java
	edu/stanford/nlp/objectbank/ReaderIteratorFactory.java
	edu/stanford/nlp/objectbank/TokenizerFactory.java
	edu/stanford/nlp/parser/KBestViterbiParser.java
	edu/stanford/nlp/parser/Parser.java
	edu/stanford/nlp/parser/ViterbiParser.java
	edu/stanford/nlp/parser/lexparser/AbstractDependencyGrammar.java
	edu/stanford/nlp/parser/lexparser/AbstractTreeExtractor.java
	edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams.java
	edu/stanford/nlp/parser/lexparser/BaseLexicon.java
	edu/stanford/nlp/parser/lexparser/BasicCategoryTagProjection.java
	edu/stanford/nlp/parser/lexparser/DependencyGrammar.java
	edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams.java
	edu/stanford/nlp/parser/lexparser/Extractor.java
	edu/stanford/nlp/parser/lexparser/IntDependency.java
	edu/stanford/nlp/parser/lexparser/IntTaggedWord.java
	edu/stanford/nlp/parser/lexparser/Lexicon.java
	edu/stanford/nlp/parser/lexparser/MLEDependencyGrammar.java
	edu/stanford/nlp/parser/lexparser/MLEDependencyGrammarExtractor.java
	edu/stanford/nlp/parser/lexparser/Options.java
	edu/stanford/nlp/parser/lexparser/TagProjection.java
	edu/stanford/nlp/parser/lexparser/TestOptions.java
	edu/stanford/nlp/parser/lexparser/TestTagProjection.java
	edu/stanford/nlp/parser/lexparser/TrainOptions.java
	edu/stanford/nlp/parser/lexparser/TreeCollinizer.java
	edu/stanford/nlp/parser/lexparser/TreebankLangParserParams.java
	edu/stanford/nlp/parser/lexparser/UnknownWordModel.java
	edu/stanford/nlp/parser/lexparser/UnknownWordModelTrainer.java
	edu/stanford/nlp/parser/metrics/AbstractEval.java
	edu/stanford/nlp/parser/tools/PunctEquivalenceClasser.java
	edu/stanford/nlp/parser/ui/TreeJPanel.java
	edu/stanford/nlp/process/AbstractTokenizer.java
	edu/stanford/nlp/process/Americanize.java
	edu/stanford/nlp/process/CoreLabelTokenFactory.java
	edu/stanford/nlp/process/CoreTokenFactory.java
	edu/stanford/nlp/process/JFlexDummyLexer.java
	edu/stanford/nlp/process/LexedTokenFactory.java
	edu/stanford/nlp/process/LexerTokenizer.java
	edu/stanford/nlp/process/Morpha.java
	edu/stanford/nlp/process/Morphology.java
	edu/stanford/nlp/process/PTB2TextLexer.java
	edu/stanford/nlp/process/PTBLexer.java
	edu/stanford/nlp/process/PTBTokenizer.java
	edu/stanford/nlp/process/SerializableFunction.java
	edu/stanford/nlp/process/Tokenizer.java
	edu/stanford/nlp/process/TokenizerAdapter.java
	edu/stanford/nlp/process/WhitespaceLexer.java
	edu/stanford/nlp/process/WhitespaceTokenizer.java
	edu/stanford/nlp/process/WordTokenFactory.java
	edu/stanford/nlp/semgrex/Alignment.java
	edu/stanford/nlp/semgrex/CoordinationPattern.java
	edu/stanford/nlp/semgrex/GraphRelation.java
	edu/stanford/nlp/semgrex/NodePattern.java
	edu/stanford/nlp/semgrex/ParseException.java
	edu/stanford/nlp/semgrex/SemgrexMatcher.java
	edu/stanford/nlp/semgrex/SemgrexParseException.java
	edu/stanford/nlp/semgrex/SemgrexParser.java
	edu/stanford/nlp/semgrex/SemgrexParserConstants.java
	edu/stanford/nlp/semgrex/SemgrexParserTokenManager.java
	edu/stanford/nlp/semgrex/SemgrexPattern.java
	edu/stanford/nlp/semgrex/SimpleCharStream.java
	edu/stanford/nlp/semgrex/Token.java
	edu/stanford/nlp/semgrex/TokenMgrError.java
	edu/stanford/nlp/semgrex/VariableStrings.java
	edu/stanford/nlp/stats/AbstractCounter.java
	edu/stanford/nlp/stats/ClassicCounter.java
	edu/stanford/nlp/stats/Counter.java
	edu/stanford/nlp/stats/Counters.java
	edu/stanford/nlp/stats/EquivalenceClasser.java
	edu/stanford/nlp/stats/IntCounter.java
	edu/stanford/nlp/stats/TwoDimensionalCounter.java
	edu/stanford/nlp/stats/TwoDimensionalCounterInterface.java
	edu/stanford/nlp/swing/FontDetector.java
	edu/stanford/nlp/swing/TooltipJList.java
	edu/stanford/nlp/trees/AbstractCollinsHeadFinder.java
	edu/stanford/nlp/trees/AbstractTreebankLanguagePack.java
	edu/stanford/nlp/trees/BobChrisTreeNormalizer.java
	edu/stanford/nlp/trees/CollinsHeadFinder.java
	edu/stanford/nlp/trees/CollocationFinder.java
	edu/stanford/nlp/trees/CompositeTreeTransformer.java
	edu/stanford/nlp/trees/CompositeTreebank.java
	edu/stanford/nlp/trees/Constituent.java
	edu/stanford/nlp/trees/ConstituentFactory.java
	edu/stanford/nlp/trees/CoordinationTransformer.java
	edu/stanford/nlp/trees/Dependencies.java
	edu/stanford/nlp/trees/Dependency.java
	edu/stanford/nlp/trees/DependencyFactory.java
	edu/stanford/nlp/trees/DependencyPrinter.java
	edu/stanford/nlp/trees/DependencyReader.java
	edu/stanford/nlp/trees/DependencyTreeTransformer.java
	edu/stanford/nlp/trees/DependencyTyper.java
	edu/stanford/nlp/trees/DiskTreebank.java
	edu/stanford/nlp/trees/EnglishGrammaticalRelations.java
	edu/stanford/nlp/trees/EnglishGrammaticalStructure.java
	edu/stanford/nlp/trees/FilteringTreeReader.java
	edu/stanford/nlp/trees/GrammaticalFunctionTreeNormalizer.java
	edu/stanford/nlp/trees/GrammaticalRelation.java
	edu/stanford/nlp/trees/GrammaticalStructure.java
	edu/stanford/nlp/trees/GrammaticalStructureFactory.java
	edu/stanford/nlp/trees/GrammaticalStructureFromDependenciesFactory.java
	edu/stanford/nlp/trees/HeadFinder.java
	edu/stanford/nlp/trees/Labeled.java
	edu/stanford/nlp/trees/LabeledConstituent.java
	edu/stanford/nlp/trees/LabeledScoredTreeFactory.java
	edu/stanford/nlp/trees/LabeledScoredTreeNode.java
	edu/stanford/nlp/trees/LabeledScoredTreeReaderFactory.java
	edu/stanford/nlp/trees/LeftHeadFinder.java
	edu/stanford/nlp/trees/MemoryTreebank.java
	edu/stanford/nlp/trees/ModCollinsHeadFinder.java
	edu/stanford/nlp/trees/NPTmpRetainingTreeNormalizer.java
	edu/stanford/nlp/trees/NamedDependency.java
	edu/stanford/nlp/trees/OrderedCombinationTreeNormalizer.java
	edu/stanford/nlp/trees/PennTreeReader.java
	edu/stanford/nlp/trees/PennTreeReaderFactory.java
	edu/stanford/nlp/trees/PennTreebankLanguagePack.java
	edu/stanford/nlp/trees/PennTreebankTokenizer.java
	edu/stanford/nlp/trees/QPTreeTransformer.java
	edu/stanford/nlp/trees/SemanticHeadFinder.java
	edu/stanford/nlp/trees/SimpleConstituent.java
	edu/stanford/nlp/trees/SimpleConstituentFactory.java
	edu/stanford/nlp/trees/SimpleTree.java
	edu/stanford/nlp/trees/SimpleTreeFactory.java
	edu/stanford/nlp/trees/StringLabeledScoredTreeReaderFactory.java
	edu/stanford/nlp/trees/TransformingTreebank.java
	edu/stanford/nlp/trees/Tree.java
	edu/stanford/nlp/trees/TreeCoreAnnotations.java
	edu/stanford/nlp/trees/TreeFactory.java
	edu/stanford/nlp/trees/TreeFunctions.java
	edu/stanford/nlp/trees/TreeGraph.java
	edu/stanford/nlp/trees/TreeGraphNode.java
	edu/stanford/nlp/trees/TreeGraphNodeFactory.java
	edu/stanford/nlp/trees/TreeNormalizer.java
	edu/stanford/nlp/trees/TreePrint.java
	edu/stanford/nlp/trees/TreeReader.java
	edu/stanford/nlp/trees/TreeReaderFactory.java
	edu/stanford/nlp/trees/TreeTokenizerFactory.java
	edu/stanford/nlp/trees/TreeTransformer.java
	edu/stanford/nlp/trees/TreeVisitor.java
	edu/stanford/nlp/trees/Treebank.java
	edu/stanford/nlp/trees/TreebankFactory.java
	edu/stanford/nlp/trees/TreebankLanguagePack.java
	edu/stanford/nlp/trees/Trees.java
	edu/stanford/nlp/trees/TypedDependency.java
	edu/stanford/nlp/trees/UnnamedConcreteDependency.java
	edu/stanford/nlp/trees/UnnamedDependency.java
	edu/stanford/nlp/trees/WordNetConnection.java
	edu/stanford/nlp/trees/WordStemmer.java
	edu/stanford/nlp/trees/international/arabic/ArabicHeadFinder.java
	edu/stanford/nlp/trees/international/arabic/ArabicTreeNormalizer.java
	edu/stanford/nlp/trees/international/arabic/ArabicTreeReaderFactory.java
	edu/stanford/nlp/trees/international/arabic/ArabicTreebankLanguagePack.java
	edu/stanford/nlp/trees/international/arabic/ArabicTreebankTokenizer.java
	edu/stanford/nlp/trees/international/french/DybroFrenchHeadFinder.java
	edu/stanford/nlp/trees/international/french/FrenchHeadFinder.java
	edu/stanford/nlp/trees/international/french/FrenchTreeNormalizer.java
	edu/stanford/nlp/trees/international/french/FrenchTreeReader.java
	edu/stanford/nlp/trees/international/french/FrenchTreeReaderFactory.java
	edu/stanford/nlp/trees/international/french/FrenchTreebankLanguagePack.java
	edu/stanford/nlp/trees/international/negra/NegraHeadFinder.java
	edu/stanford/nlp/trees/international/negra/NegraLabel.java
	edu/stanford/nlp/trees/international/negra/NegraPennLanguagePack.java
	edu/stanford/nlp/trees/international/negra/NegraPennLexer.java
	edu/stanford/nlp/trees/international/negra/NegraPennTokenizer.java
	edu/stanford/nlp/trees/international/negra/NegraPennTreeNormalizer.java
	edu/stanford/nlp/trees/international/negra/NegraPennTreeReaderFactory.java
	edu/stanford/nlp/trees/international/pennchinese/BikelChineseHeadFinder.java
	edu/stanford/nlp/trees/international/pennchinese/CHTBLexer.java
	edu/stanford/nlp/trees/international/pennchinese/CHTBTokenizer.java
	edu/stanford/nlp/trees/international/pennchinese/CTBErrorCorrectingTreeNormalizer.java
	edu/stanford/nlp/trees/international/pennchinese/CTBTreeReaderFactory.java
	edu/stanford/nlp/trees/international/pennchinese/ChineseEnglishWordMap.java
	edu/stanford/nlp/trees/international/pennchinese/ChineseHeadFinder.java
	edu/stanford/nlp/trees/international/pennchinese/ChineseSemanticHeadFinder.java
	edu/stanford/nlp/trees/international/pennchinese/ChineseTreebankLanguagePack.java
	edu/stanford/nlp/trees/international/pennchinese/FragDiscardingPennTreeReader.java
	edu/stanford/nlp/trees/international/pennchinese/NoEmptiesCTBTreeReaderFactory.java
	edu/stanford/nlp/trees/international/pennchinese/SunJurafskyChineseHeadFinder.java
	edu/stanford/nlp/trees/international/tuebadz/TueBaDZHeadFinder.java
	edu/stanford/nlp/trees/international/tuebadz/TueBaDZLanguagePack.java
	edu/stanford/nlp/trees/international/tuebadz/TueBaDZPennTreeNormalizer.java
	edu/stanford/nlp/trees/international/tuebadz/TueBaDZTreeReaderFactory.java
	edu/stanford/nlp/trees/semgraph/SemanticGraph.java
	edu/stanford/nlp/trees/semgraph/SemanticGraphEdge.java
	edu/stanford/nlp/trees/semgraph/SemanticGraphFormatter.java
	edu/stanford/nlp/trees/tregex/CoordinationPattern.java
	edu/stanford/nlp/trees/tregex/DescriptionPattern.java
	edu/stanford/nlp/trees/tregex/Macros.java
	edu/stanford/nlp/trees/tregex/ParseException.java
	edu/stanford/nlp/trees/tregex/Relation.java
	edu/stanford/nlp/trees/tregex/SimpleCharStream.java
	edu/stanford/nlp/trees/tregex/Token.java
	edu/stanford/nlp/trees/tregex/TokenMgrError.java
	edu/stanford/nlp/trees/tregex/TregexMatcher.java
	edu/stanford/nlp/trees/tregex/TregexParseException.java
	edu/stanford/nlp/trees/tregex/TregexParser.java
	edu/stanford/nlp/trees/tregex/TregexParser.jj
	edu/stanford/nlp/trees/tregex/TregexParserConstants.java
	edu/stanford/nlp/trees/tregex/TregexParserTokenManager.java
	edu/stanford/nlp/trees/tregex/TregexPattern.java
	edu/stanford/nlp/trees/tregex/TregexPatternCompiler.java
	edu/stanford/nlp/trees/tregex/VariableStrings.java
	edu/stanford/nlp/trees/tregex/gui/DisplayMatchesPanel.java
	edu/stanford/nlp/trees/tregex/gui/FilePanel.java
	edu/stanford/nlp/trees/tregex/gui/FileTreeModel.java
	edu/stanford/nlp/trees/tregex/gui/FileTreeNode.java
	edu/stanford/nlp/trees/tregex/gui/HighlightUtils.java
	edu/stanford/nlp/trees/tregex/gui/InputPanel.java
	edu/stanford/nlp/trees/tregex/gui/MatchesPanel.java
	edu/stanford/nlp/trees/tregex/gui/OSXAdapter.java
	edu/stanford/nlp/trees/tregex/gui/PreferencesPanel.java
	edu/stanford/nlp/trees/tregex/gui/ScrollableTreeJPanel.java
	edu/stanford/nlp/trees/tregex/gui/Tdiff.java
	edu/stanford/nlp/trees/tregex/gui/TreeFromFile.java
	edu/stanford/nlp/trees/tregex/gui/TregexGUI.java
	edu/stanford/nlp/trees/tregex/gui/tregex-manifest.txt
	edu/stanford/nlp/trees/tregex/package.html
	edu/stanford/nlp/trees/tregex/tsurgeon/AdjoinNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/AdjoinToFootNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/AdjoinToHeadNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/AuxiliaryTree.java
	edu/stanford/nlp/trees/tregex/tsurgeon/CoindexNodes.java
	edu/stanford/nlp/trees/tregex/tsurgeon/CoindexationGenerator.java
	edu/stanford/nlp/trees/tregex/tsurgeon/DeleteNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/ExciseNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/FetchNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/HoldTreeNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/InsertNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/JJTTsurgeonParserState.java
	edu/stanford/nlp/trees/tregex/tsurgeon/MoveNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/Node.java
	edu/stanford/nlp/trees/tregex/tsurgeon/ParseException.java
	edu/stanford/nlp/trees/tregex/tsurgeon/PruneNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/RelabelNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/ReplaceNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/SimpleCharStream.java
	edu/stanford/nlp/trees/tregex/tsurgeon/SimpleNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/Token.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TokenMgrError.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TreeLocation.java
	edu/stanford/nlp/trees/tregex/tsurgeon/Tsurgeon.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonParseException.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonParser.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonParser.jjt
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonParserConstants.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonParserTokenManager.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonParserTreeConstants.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonPattern.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonPatternRoot.java
	edu/stanford/nlp/trees/tregex/tsurgeon/package.html
	edu/stanford/nlp/util/AbstractIterator.java
	edu/stanford/nlp/util/ArrayCoreMap.java
	edu/stanford/nlp/util/ArrayIterable.java
	edu/stanford/nlp/util/ArrayMap.java
	edu/stanford/nlp/util/ArrayUtils.java
	edu/stanford/nlp/util/BinaryHeapPriorityQueue.java
	edu/stanford/nlp/util/ByteStreamGobbler.java
	edu/stanford/nlp/util/CollectionFactory.java
	edu/stanford/nlp/util/CollectionUtils.java
	edu/stanford/nlp/util/CollectionValuedMap.java
	edu/stanford/nlp/util/ConcatenationIterator.java
	edu/stanford/nlp/util/CoreMap.java
	edu/stanford/nlp/util/DeltaCollectionValuedMap.java
	edu/stanford/nlp/util/DeltaMap.java
	edu/stanford/nlp/util/ErasureUtils.java
	edu/stanford/nlp/util/Factory.java
	edu/stanford/nlp/util/FilePathProcessor.java
	edu/stanford/nlp/util/FileProcessor.java
	edu/stanford/nlp/util/Filter.java
	edu/stanford/nlp/util/FilteredIterator.java
	edu/stanford/nlp/util/Filters.java
	edu/stanford/nlp/util/FixedPrioritiesPriorityQueue.java
	edu/stanford/nlp/util/Function.java
	edu/stanford/nlp/util/Generics.java
	edu/stanford/nlp/util/HasInterval.java
	edu/stanford/nlp/util/HashIndex.java
	edu/stanford/nlp/util/HashableCoreMap.java
	edu/stanford/nlp/util/IdentityHashSet.java
	edu/stanford/nlp/util/Index.java
	edu/stanford/nlp/util/IntPair.java
	edu/stanford/nlp/util/IntQuadruple.java
	edu/stanford/nlp/util/IntTriple.java
	edu/stanford/nlp/util/IntTuple.java
	edu/stanford/nlp/util/IntUni.java
	edu/stanford/nlp/util/Interner.java
	edu/stanford/nlp/util/Interval.java
	edu/stanford/nlp/util/IterableIterator.java
	edu/stanford/nlp/util/MapFactory.java
	edu/stanford/nlp/util/Maps.java
	edu/stanford/nlp/util/MetaClass.java
	edu/stanford/nlp/util/MutableDouble.java
	edu/stanford/nlp/util/MutableInteger.java
	edu/stanford/nlp/util/Pair.java
	edu/stanford/nlp/util/PriorityQueue.java
	edu/stanford/nlp/util/PropertiesUtils.java
	edu/stanford/nlp/util/ReflectionLoading.java
	edu/stanford/nlp/util/Scored.java
	edu/stanford/nlp/util/ScoredObject.java
	edu/stanford/nlp/util/Sets.java
	edu/stanford/nlp/util/StreamGobbler.java
	edu/stanford/nlp/util/StringParsingTask.java
	edu/stanford/nlp/util/StringUtils.java
	edu/stanford/nlp/util/Timing.java
	edu/stanford/nlp/util/Triple.java
	edu/stanford/nlp/util/TypesafeMap.java
	edu/stanford/nlp/util/XMLUtils.java
	edu/stanford/nlp/util/concurrent/SynchronizedInterner.java
	edu/stanford/nlp/util/logging/Color.java
	edu/stanford/nlp/util/logging/LogRecordHandler.java
	edu/stanford/nlp/util/logging/OutputHandler.java
	edu/stanford/nlp/util/logging/PrettyLoggable.java
	edu/stanford/nlp/util/logging/PrettyLogger.java
	edu/stanford/nlp/util/logging/Redwood.java
	edu/stanford/nlp/util/logging/RedwoodConfiguration.java
	edu/stanford/nlp/util/logging/RedwoodPrintStream.java
	edu/stanford/nlp/util/logging/RepeatedRecordHandler.java
	edu/stanford/nlp/util/logging/Style.java
	edu/stanford/nlp/util/logging/VisibilityHandler.java

#####
GENERATING JAR FILE
#####

JAR file:
	/u/nlp/distrib/stanford-tregex-2012-05-22/stanford-tregex-src-2012-05-22.jar
Root directory:
	/user/horatio/releases/v1.3.2/projects/core/src

jar cf /juicy/u44/u/nlp/distrib/stanford-tregex-2012-05-22/stanford-tregex-src-2012-05-22.jar edu/stanford/nlp/graph/ConnectedComponents.java \
 edu/stanford/nlp/graph/DijkstraShortestPath.java \
 edu/stanford/nlp/graph/DirectedMultiGraph.java \
 edu/stanford/nlp/graph/Graph.java \
 edu/stanford/nlp/international/arabic/ArabicMorphoFeatureSpecification.java \
 edu/stanford/nlp/international/arabic/process/ArabicLexer.java \
 edu/stanford/nlp/international/arabic/process/ArabicTokenizer.java \
 edu/stanford/nlp/international/french/FrenchMorphoFeatureSpecification.java \
 edu/stanford/nlp/international/morph/MorphoFeatureSpecification.java \
 edu/stanford/nlp/international/morph/MorphoFeatures.java \
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 edu/stanford/nlp/parser/lexparser/TrainOptions.java \
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 edu/stanford/nlp/parser/lexparser/TreebankLangParserParams.java \
 edu/stanford/nlp/parser/lexparser/UnknownWordModel.java \
 edu/stanford/nlp/parser/lexparser/UnknownWordModelTrainer.java \
 edu/stanford/nlp/parser/metrics/AbstractEval.java \
 edu/stanford/nlp/parser/tools/PunctEquivalenceClasser.java \
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rm $dir/depdump
cp $classjar $dir/stanford-tregex.jar




mkdir $dir/src
cd $dir/src
unzip $srcjar
Archive:  /u/nlp/distrib/stanford-tregex-2012-05-22/stanford-tregex-src-2012-05-22.jar
   creating: META-INF/
  inflating: META-INF/MANIFEST.MF    
  inflating: edu/stanford/nlp/graph/ConnectedComponents.java  
  inflating: edu/stanford/nlp/graph/DijkstraShortestPath.java  
  inflating: edu/stanford/nlp/graph/DirectedMultiGraph.java  
  inflating: edu/stanford/nlp/graph/Graph.java  
  inflating: edu/stanford/nlp/international/arabic/ArabicMorphoFeatureSpecification.java  
  inflating: edu/stanford/nlp/international/arabic/process/ArabicLexer.java  
  inflating: edu/stanford/nlp/international/arabic/process/ArabicTokenizer.java  
  inflating: edu/stanford/nlp/international/french/FrenchMorphoFeatureSpecification.java  
  inflating: edu/stanford/nlp/international/morph/MorphoFeatureSpecification.java  
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rm $srcjar
rm -rf META-INF




cd $dir
mkdir javadoc
javadoc -d javadoc -sourcepath src -J-mx256m -subpackages edu.stanford.nlp -author -bottom '<FONT SIZE=2><A HREF="http://nlp.stanford.edu">Stanford NLP Group</A></FONT>' -doctitle "Stanford JavaNLP Tregex/Tsurgeon API Documentation" -classpath "$JAVANLP_HOME/projects/core/lib/AppleJavaExtensions.jar" -link "http://java.sun.com/j2se/1.6.0/docs/api" -windowtitle "Stanford JavaNLP API"
Loading source files for package edu.stanford.nlp.objectbank...
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Constructing Javadoc information...
Standard Doclet version 1.6.0_27
Building tree for all the packages and classes...
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/juicy/u44/u/nlp/distrib/stanford-tregex-2012-05-22/src/edu/stanford/nlp/util/Scored.java:14: warning - Tag @link: reference not found: ScoredComparator
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Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ParataxisGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ParticipialModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PhrasalVerbParticleGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PossessionModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PossessiveModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PreconjunctGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PredeterminerGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PredicateGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PrepositionalComplementGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PrepositionalModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PrepositionalObjectGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PunctuationGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PurposeClauseModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.QuantifierModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ReferentGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.RelativeClauseModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.RelativeGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.SemanticDependentGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.SubjectGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.TemporalModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.XClausalComplementGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalStructure.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalStructure.FromDependenciesFactory.html...
Generating javadoc/edu/stanford/nlp/trees//FilteringTreeReader.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalFunctionTreeNormalizer.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.html...
/juicy/u44/u/nlp/distrib/stanford-tregex-2012-05-22/src/edu/stanford/nlp/trees/GrammaticalRelation.java:85: warning - Tag @see: reference not found: edu.stanford.nlp.trees.international.pennchinese.ChineseGrammaticalRelations
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.DependentGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.GovernorGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.GrammaticalRelationAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.KillGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.Language.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.RootGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalStructure.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalStructureFactory.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalStructureFromDependenciesFactory.html...
Generating javadoc/edu/stanford/nlp/trees//HeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees//Labeled.html...
Generating javadoc/edu/stanford/nlp/trees//LabeledConstituent.html...
Generating javadoc/edu/stanford/nlp/trees//LabeledScoredTreeFactory.html...
Generating javadoc/edu/stanford/nlp/trees//LabeledScoredTreeNode.html...
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Generating javadoc/edu/stanford/nlp/trees//LeftHeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees//MemoryTreebank.html...
Generating javadoc/edu/stanford/nlp/trees//ModCollinsHeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees//NamedDependency.html...
Generating javadoc/edu/stanford/nlp/trees//NPTmpRetainingTreeNormalizer.html...
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Generating javadoc/edu/stanford/nlp/trees//OrderedCombinationTreeNormalizer.html...
Generating javadoc/edu/stanford/nlp/trees//PennTreebankLanguagePack.html...
Generating javadoc/edu/stanford/nlp/trees//PennTreebankTokenizer.html...
Generating javadoc/edu/stanford/nlp/trees//PennTreeReader.html...
Generating javadoc/edu/stanford/nlp/trees//PennTreeReaderFactory.html...
Generating javadoc/edu/stanford/nlp/trees//QPTreeTransformer.html...
Generating javadoc/edu/stanford/nlp/trees//SemanticHeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees//SimpleConstituent.html...
Generating javadoc/edu/stanford/nlp/trees//SimpleConstituentFactory.html...
Generating javadoc/edu/stanford/nlp/trees//SimpleTree.html...
Generating javadoc/edu/stanford/nlp/trees//SimpleTreeFactory.html...
Generating javadoc/edu/stanford/nlp/trees//StringLabeledScoredTreeReaderFactory.html...
Generating javadoc/edu/stanford/nlp/trees//TransformingTreebank.html...
Generating javadoc/edu/stanford/nlp/trees//Tree.html...
Generating javadoc/edu/stanford/nlp/trees//Treebank.html...
Generating javadoc/edu/stanford/nlp/trees//TreebankFactory.html...
Generating javadoc/edu/stanford/nlp/trees//TreebankLanguagePack.html...
Generating javadoc/edu/stanford/nlp/trees//TreeCoreAnnotations.html...
Generating javadoc/edu/stanford/nlp/trees//TreeCoreAnnotations.HeadTagAnnotation.html...
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Generating javadoc/edu/stanford/nlp/trees//TreeCoreAnnotations.TreeAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//TreeFactory.html...
Generating javadoc/edu/stanford/nlp/trees//TreeFunctions.html...
Generating javadoc/edu/stanford/nlp/trees//TreeGraph.html...
Generating javadoc/edu/stanford/nlp/trees//TreeGraphNode.html...
Generating javadoc/edu/stanford/nlp/trees//TreeGraphNodeFactory.html...
Generating javadoc/edu/stanford/nlp/trees//TreeNormalizer.html...
Generating javadoc/edu/stanford/nlp/trees//TreePrint.html...
Generating javadoc/edu/stanford/nlp/trees//TreeReader.html...
Generating javadoc/edu/stanford/nlp/trees//TreeReaderFactory.html...
Generating javadoc/edu/stanford/nlp/trees//Trees.html...
Generating javadoc/edu/stanford/nlp/trees//TreeTokenizerFactory.html...
Generating javadoc/edu/stanford/nlp/trees//TreeTransformer.html...
Generating javadoc/edu/stanford/nlp/trees//TreeVisitor.html...
Generating javadoc/edu/stanford/nlp/trees//TypedDependency.html...
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Generating javadoc/edu/stanford/nlp/trees//UnnamedDependency.html...
Generating javadoc/edu/stanford/nlp/trees//WordNetConnection.html...
Generating javadoc/edu/stanford/nlp/trees//WordStemmer.html...
Generating javadoc/edu/stanford/nlp/trees/semgraph//SemanticGraph.html...
Generating javadoc/edu/stanford/nlp/trees/semgraph//SemanticGraphEdge.html...
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Generating javadoc/edu/stanford/nlp/trees/international/negra//NegraHeadFinder.html...
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Generating javadoc/edu/stanford/nlp/trees/international/negra//NegraPennTokenizer.html...
Generating javadoc/edu/stanford/nlp/trees/international/negra//NegraPennTreeNormalizer.html...
Generating javadoc/edu/stanford/nlp/trees/international/negra//NegraPennTreeReaderFactory.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//BikelChineseHeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//ChineseEnglishWordMap.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//ChineseHeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//ChineseSemanticHeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//ChineseTreebankLanguagePack.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//CHTBTokenizer.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//CTBErrorCorrectingTreeNormalizer.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//CTBTreeReaderFactory.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//FragDiscardingPennTreeReader.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//NoEmptiesCTBTreeReaderFactory.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//SunJurafskyChineseHeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees/international/arabic//ArabicHeadFinder.html...
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Generating javadoc/edu/stanford/nlp/trees/international/arabic//ArabicTreebankLanguagePack.html...
Generating javadoc/edu/stanford/nlp/trees/international/arabic//ArabicTreebankTokenizer.html...
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Generating javadoc/edu/stanford/nlp/trees/international/arabic//ArabicTreeNormalizer.ArabicEmptyFilter.html...
Generating javadoc/edu/stanford/nlp/trees/international/arabic//ArabicTreeReaderFactory.html...
Generating javadoc/edu/stanford/nlp/trees/international/arabic//ArabicTreeReaderFactory.ArabicRawTreeReaderFactory.html...
Generating javadoc/edu/stanford/nlp/trees/international/french//DybroFrenchHeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees/international/french//FrenchHeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees/international/french//FrenchTreebankLanguagePack.html...
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Generating javadoc/edu/stanford/nlp/trees/international/french//FrenchTreeReader.html...
Generating javadoc/edu/stanford/nlp/trees/international/french//FrenchTreeReaderFactory.html...
Generating javadoc/edu/stanford/nlp/trees/international/tuebadz//TueBaDZHeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees/international/tuebadz//TueBaDZLanguagePack.html...
Generating javadoc/edu/stanford/nlp/trees/international/tuebadz//TueBaDZPennTreeNormalizer.html...
Generating javadoc/edu/stanford/nlp/trees/international/tuebadz//TueBaDZTreeReaderFactory.html...
Generating javadoc/edu/stanford/nlp/trees/tregex//Macros.html...
Generating javadoc/edu/stanford/nlp/trees/tregex//ParseException.html...
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Generating javadoc/edu/stanford/nlp/trees/tregex//TregexPattern.html...
Generating javadoc/edu/stanford/nlp/trees/tregex//TregexPattern.TRegexTreeReaderFactory.html...
Generating javadoc/edu/stanford/nlp/trees/tregex//TregexPatternCompiler.html...
Generating javadoc/edu/stanford/nlp/trees/tregex/tsurgeon//CoindexNodes.html...
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Generating javadoc/edu/stanford/nlp/trees/tregex/gui//DisplayMatchesPanel.html...
Generating javadoc/edu/stanford/nlp/trees/tregex/gui//DisplayMatchesPanel.FilenameMouseInputAdapter.html...
Generating javadoc/edu/stanford/nlp/trees/tregex/gui//FilePanel.html...
Generating javadoc/edu/stanford/nlp/trees/tregex/gui//FileTreeModel.html...
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Generating javadoc/edu/stanford/nlp/trees/tregex/gui//FileTreeNode.FileTreeNodeListener.html...
Generating javadoc/edu/stanford/nlp/trees/tregex/gui//HighlightUtils.html...
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Generating javadoc/edu/stanford/nlp/trees/tregex/gui//InputPanel.TRegexGUITreeVisitor.html...
Generating javadoc/edu/stanford/nlp/trees/tregex/gui//MatchesPanel.html...
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Generating javadoc/edu/stanford/nlp/trees/tregex/gui//OSXAdapter.html...
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Generating javadoc/edu/stanford/nlp/trees/tregex/gui//ScrollableTreeJPanel.html...
Generating javadoc/edu/stanford/nlp/trees/tregex/gui//Tdiff.html...
Generating javadoc/edu/stanford/nlp/trees/tregex/gui//TreeFromFile.html...
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Generating javadoc/edu/stanford/nlp/trees/tregex/gui//TregexGUI.TransferActionListener.html...
Generating javadoc/edu/stanford/nlp/international/morph//MorphoFeatures.html...
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/juicy/u44/u/nlp/distrib/stanford-tregex-2012-05-22/src/edu/stanford/nlp/international/morph/MorphoFeatureSpecification.java:57: warning - @return tag has no arguments.
Generating javadoc/edu/stanford/nlp/international/morph//MorphoFeatureSpecification.MorphoFeatureType.html...
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Generating javadoc/edu/stanford/nlp/international/arabic/process//ArabicTokenizer.ArabicTokenizerFactory.html...
Generating javadoc/edu/stanford/nlp/international/arabic//ArabicMorphoFeatureSpecification.html...
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Generating javadoc/edu/stanford/nlp/international/french//FrenchMorphoFeatureSpecification.html...
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Generating javadoc/edu/stanford/nlp/io//EncodingPrintWriter.err.html...
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Generating javadoc/edu/stanford/nlp/io//RuntimeIOException.html...
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Generating javadoc/edu/stanford/nlp/math//SloppyMath.html...
Generating javadoc/edu/stanford/nlp/semgrex//Alignment.html...
Generating javadoc/edu/stanford/nlp/semgrex//CoordinationPattern.html...
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Generating javadoc/edu/stanford/nlp/ling//AnnotationLookup.html...
Generating javadoc/edu/stanford/nlp/ling//AnnotationLookup.KeyLookup.html...
Generating javadoc/edu/stanford/nlp/ling//CategoryWordTag.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.BagOfWordsAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.BeAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.BeforeAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.BeginIndexAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.BestCliquesAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.BestFullAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.CalendarAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.CategoryAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.CategoryFunctionalTagAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.CharacterOffsetBeginAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.ChineseCharAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.ChineseIsSegmentedAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.ChineseOrigSegAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.ChunkAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.CoarseTagAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.CommonWordsAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.CoNLLDepParentIndexAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.CoNLLSRLAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.ContextsAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.CopyAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.CostMagnificationAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.D2_LBeginAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.D2_LMiddleAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.DayAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.DependentsAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.DictAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.DistSimAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.DoAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.DocDateAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.DocIDAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.DomainAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.EndIndexAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.EntityRuleAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.EntityTypeAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.FeaturesAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.FemaleGazAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.FirstChildAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.ForcedSentenceEndAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.GoldAnswerAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.GovernorAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.HaveAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.HeadWordStringAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.HeightAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.IDAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.IDFAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.INAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.InterpretationAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.LabelWeightAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.LastGazAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.LeftChildrenNodeAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.LeftTermAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.LemmaAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.LEndAnnotation.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.LMiddleAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.MaleGazAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.MarkingAnnotation.html...
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/juicy/u44/u/nlp/distrib/stanford-tregex-2012-05-22/src/edu/stanford/nlp/ling/CoreAnnotations.java:519: warning - Tag @link: reference not found: edu.stanford.nlp.process.WordShapeClassifier
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Building index for all the packages and classes...
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/juicy/u44/u/nlp/distrib/stanford-tregex-2012-05-22/src/edu/stanford/nlp/stats/IntCounter.java:178: warning - Tag @link: reference not found: edu.stanford.nlp.stats.Distribution
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Building index for all classes...
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Generating javadoc/help-doc.html...
Generating javadoc/stylesheet.css...
12 warnings




mkdir $dir/lib
cp $JAVANLP_HOME/projects/core/lib/AppleJavaExtensions.jar $dir/lib
cp $JAVANLP_HOME/projects/core/src/edu/stanford/nlp/trees/tregex/gui/*-AppleJavaExtensions.txt $dir/lib




cp $JAVANLP_HOME/projects/core/doc/tregex/README-gui.txt $dir/README-gui.txt || exit
cp $JAVANLP_HOME/projects/core/doc/tregex/README-tregex.txt $dir/README-tregex.txt || exit
cp $JAVANLP_HOME/projects/core/doc/tsurgeon/README-tsurgeon.txt $dir/README-tsurgeon.txt || exit
cp $JAVANLP_HOME/projects/core/doc/tregex/tregex.sh $dir || exit
cp $JAVANLP_HOME/projects/core/doc/tsurgeon/tsurgeon.sh $dir || exit
cp $JAVANLP_HOME/projects/core/doc/tregex/run-tregex-gui.command $dir || exit
cp $JAVANLP_HOME/projects/core/doc/tregex/run-tregex-gui.bat $dir || exit
cp $JAVANLP_HOME/projects/core/doc/software/Semgrex.ppt $dir || exit

chmod 755 $dir/tregex.sh
chmod 755 $dir/tsurgeon.sh
chmod 755 $dir/run-tregex-gui.command
chmod 755 $dir/run-tregex-gui.bat


cp $JAVANLP_HOME/projects/core/doc/tregex/LICENSE.txt $dir || exit
cp $JAVANLP_HOME/projects/core/doc/tregex/Makefile $dir || exit
cp $JAVANLP_HOME/projects/core/doc/tregex/build.xml $dir || exit


mkdir examples
cp $JAVANLP_HOME/projects/core/doc/tsurgeon/atree $dir/examples || exit
cp $JAVANLP_HOME/projects/core/doc/tsurgeon/exciseNP $dir/examples || exit
cp $JAVANLP_HOME/projects/core/doc/tsurgeon/renameVerb $dir/examples || exit
cp $JAVANLP_HOME/projects/core/doc/tsurgeon/relabelWithGroupName $dir/examples || exit




cd $dir
ant -noclasspath || exit
Buildfile: /juicy/u44/u/nlp/distrib/stanford-tregex-2012-05-22/build.xml

prepare:
    [mkdir] Created dir: /juicy/u44/u/nlp/distrib/stanford-tregex-2012-05-22/classes

classpath:

compile:
    [javac] /juicy/u44/u/nlp/distrib/stanford-tregex-2012-05-22/build.xml:121: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
    [javac] Compiling 365 source files to /juicy/u44/u/nlp/distrib/stanford-tregex-2012-05-22/classes
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.

BUILD SUCCESSFUL
Total time: 7 seconds
rm -rf classes




zip -r $srczip src
  adding: src/ (stored 0%)
  adding: src/edu/ (stored 0%)
  adding: src/edu/stanford/ (stored 0%)
  adding: src/edu/stanford/nlp/ (stored 0%)
  adding: src/edu/stanford/nlp/objectbank/ (stored 0%)
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  adding: src/edu/stanford/nlp/objectbank/LineIterator.java (deflated 65%)
  adding: src/edu/stanford/nlp/objectbank/TokenizerFactory.java (deflated 50%)
  adding: src/edu/stanford/nlp/objectbank/IdentityFunction.java (deflated 37%)
  adding: src/edu/stanford/nlp/objectbank/ReaderIteratorFactory.java (deflated 73%)
  adding: src/edu/stanford/nlp/objectbank/ObjectBank.java (deflated 73%)
  adding: src/edu/stanford/nlp/util/ (stored 0%)
  adding: src/edu/stanford/nlp/util/ArrayMap.java (deflated 72%)
  adding: src/edu/stanford/nlp/util/MapFactory.java (deflated 85%)
  adding: src/edu/stanford/nlp/util/ArrayUtils.java (deflated 82%)
  adding: src/edu/stanford/nlp/util/Timing.java (deflated 83%)
  adding: src/edu/stanford/nlp/util/BinaryHeapPriorityQueue.java (deflated 74%)
  adding: src/edu/stanford/nlp/util/PriorityQueue.java (deflated 64%)
  adding: src/edu/stanford/nlp/util/CollectionUtils.java (deflated 77%)
  adding: src/edu/stanford/nlp/util/AbstractIterator.java (deflated 48%)
  adding: src/edu/stanford/nlp/util/StreamGobbler.java (deflated 50%)
  adding: src/edu/stanford/nlp/util/ScoredObject.java (deflated 59%)
  adding: src/edu/stanford/nlp/util/IntQuadruple.java (deflated 57%)
  adding: src/edu/stanford/nlp/util/ErasureUtils.java (deflated 57%)
  adding: src/edu/stanford/nlp/util/ByteStreamGobbler.java (deflated 63%)
  adding: src/edu/stanford/nlp/util/MetaClass.java (deflated 77%)
  adding: src/edu/stanford/nlp/util/Maps.java (deflated 73%)
  adding: src/edu/stanford/nlp/util/StringUtils.java (deflated 77%)
  adding: src/edu/stanford/nlp/util/logging/ (stored 0%)
  adding: src/edu/stanford/nlp/util/logging/Style.java (deflated 34%)
  adding: src/edu/stanford/nlp/util/logging/RepeatedRecordHandler.java (deflated 74%)
  adding: src/edu/stanford/nlp/util/logging/OutputHandler.java (deflated 72%)
  adding: src/edu/stanford/nlp/util/logging/RedwoodPrintStream.java (deflated 73%)
  adding: src/edu/stanford/nlp/util/logging/PrettyLogger.java (deflated 75%)
  adding: src/edu/stanford/nlp/util/logging/LogRecordHandler.java (deflated 61%)
  adding: src/edu/stanford/nlp/util/logging/VisibilityHandler.java (deflated 70%)
  adding: src/edu/stanford/nlp/util/logging/Redwood.java (deflated 76%)
  adding: src/edu/stanford/nlp/util/logging/PrettyLoggable.java (deflated 55%)
  adding: src/edu/stanford/nlp/util/logging/Color.java (deflated 38%)
  adding: src/edu/stanford/nlp/util/logging/RedwoodConfiguration.java (deflated 77%)
  adding: src/edu/stanford/nlp/util/Filter.java (deflated 38%)
  adding: src/edu/stanford/nlp/util/FileProcessor.java (deflated 41%)
  adding: src/edu/stanford/nlp/util/MutableInteger.java (deflated 68%)
  adding: src/edu/stanford/nlp/util/PropertiesUtils.java (deflated 73%)
  adding: src/edu/stanford/nlp/util/ArrayIterable.java (deflated 50%)
  adding: src/edu/stanford/nlp/util/ArrayCoreMap.java (deflated 72%)
  adding: src/edu/stanford/nlp/util/IntTriple.java (deflated 54%)
  adding: src/edu/stanford/nlp/util/DeltaCollectionValuedMap.java (deflated 75%)
  adding: src/edu/stanford/nlp/util/ReflectionLoading.java (deflated 58%)
  adding: src/edu/stanford/nlp/util/Scored.java (deflated 40%)
  adding: src/edu/stanford/nlp/util/IntPair.java (deflated 55%)
  adding: src/edu/stanford/nlp/util/Sets.java (deflated 70%)
  adding: src/edu/stanford/nlp/util/Triple.java (deflated 62%)
  adding: src/edu/stanford/nlp/util/Index.java (deflated 67%)
  adding: src/edu/stanford/nlp/util/Factory.java (deflated 37%)
  adding: src/edu/stanford/nlp/util/MutableDouble.java (deflated 68%)
  adding: src/edu/stanford/nlp/util/IntTuple.java (deflated 66%)
  adding: src/edu/stanford/nlp/util/FilePathProcessor.java (deflated 68%)
  adding: src/edu/stanford/nlp/util/Interval.java (deflated 82%)
  adding: src/edu/stanford/nlp/util/CoreMap.java (deflated 52%)
  adding: src/edu/stanford/nlp/util/IterableIterator.java (deflated 54%)
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rm -rf javadoc




cd ..
rm -rf $predir.tgz
tar -czf $predir.tgz $predir

