trees-bootstrap(1)

NAME
trees-bootstrap - Compare support for partitions between different files.

SYNOPSIS
trees-bootstrap file1 [file2 ... ] –predicates predicate file [OPTIONS]

DESCRIPTION
Compare support for partitions between different files.

INPUT OPTIONS:

-h, –help
    Produce help message.

-s arg (=10%), –skip arg (=10%)
    Number of trees to skip.

-u arg, –until arg
    Read until this number of trees.

-m arg, –max arg
    Thin tree samples down to this number of trees.

-x arg, –subsample arg
    Factor by which to sub-sample.

–predicates arg
    Predicates to examine.

–min-support arg (=0.1)
    Minimum value of predicates to consider interesting..

-V, –verbose
    Output more log messages on stderr.

BLOCK BOOTSTRAP OPTIONS:

–bootstrap
    Do block bootstrapping to get a CI on the posterior probabilities.

–samples arg (=10000)
    Number of bootstrap samples.

–pseudocount arg (=1)
    Extra 0/1 to add to bootstrap samples.

–blocksize arg
    Block size to use in block boostrap.

–seed arg
    Random seed.

REPORTING OPTIONS:

–separation arg (=0)
    Only report trees/partitions if they differ by this many LODs

–confidence arg (=0.95)
    Width of confidence intervals

–LOD-table arg
    Write the partitions LOD10’s to a file.

REPORTING BUGS:
BAli-Phy online help: http://www.bali-phy.org/docs.php .

Please send bug reports to bali-phy-users@googlegroups.com .

AUTHORS
Benjamin Redelings.