check.format	samr.internal
compute.block.perms	samr.internal
cox.func	samr.internal
cox.seq.func	samr.internal
detec.horiz	samr.internal
detec.slab	samr.internal
est.s0	samr.internal
foldchange.paired	samr.internal
foldchange.seq.twoclass.paired	samr.internal
foldchange.seq.twoclass.unpaired	samr.internal
foldchange.twoclass	samr.internal
generate.dels	samr.internal
getperms	samr.internal
insert.value	samr.internal
integer.base.b	samr.internal
localfdr	samr.internal
multiclass.func	samr.internal
multiclass.seq.func	samr.internal
mysvd	samr.internal
onesample.ttest.func	samr.internal
paired.ttest.func	samr.internal
parse.block.labels.for.2classes	samr.internal
parse.time.labels.and.summarize.data	samr.internal
patterndiscovery.func	samr.internal
permute	samr.internal
permute.rows	samr.internal
plot.SAMoutput	samr.internal
predictlocalfdr	samr.internal
print.SAMoutput	samr.internal
quantitative.func	samr.internal
quantitative.seq.func	samr.internal
qvalue.func	samr.internal
rankcol	samr.internal
resample	samr.internal
runSAM	runSAM
SAM	SAM
sample.perms	samr.internal
samr	samr
samr.assess.samplesize	samr.assess.samplesize
samr.assess.samplesize.plot	samr.assess.samplesize.plot
samr.compute.delta.table	samr.compute.delta.table
samr.compute.delta.table.array	samr.internal
samr.compute.delta.table.seq	samr.internal
samr.compute.siggenes.table	samr.compute.siggenes.table
samr.const.multiclass.response	samr.internal
samr.const.oneclass.response	samr.internal
samr.const.oneclass.timecourse.response	samr.internal
samr.const.patterndiscovery.response	samr.internal
samr.const.quantitative.response	samr.internal
samr.const.survival.response	samr.internal
samr.const.twoclass.paired.response	samr.internal
samr.const.twoclass.paired.timecourse.response	samr.internal
samr.const.twoclass.unpaired.response	samr.internal
samr.const.twoclass.unpaired.timecourse.response	samr.internal
samr.estimate.depth	samr.estimate.depth
samr.missrate	samr.missrate
samr.norm.data	samr.norm.data
samr.plot	samr.plot
samr.pvalues.from.perms	samr.pvalues.from.perms
samr.seq.detec.slabs	samr.internal
samr.seq.null.err	samr.internal
samr.tail.strength	samr.tail.strength
SAMseq	SAMseq
sumlengths	samr.internal
timearea.func	samr.internal
ttest.func	samr.internal
varr	samr.internal
wilcoxon.func	samr.internal
wilcoxon.paired.seq.func	samr.internal
wilcoxon.unpaired.seq.func	samr.internal
