R/getGroups.R
getGroups.Rd
A short list of available groups for a kingdom of life.
getGroups(db = "refseq", kingdom)
a character string specifying the database from which the genome shall be retrieved:
db = "refseq"
db = "genbank"
Default is db = "refseq"
.
a character string specifying for which kingdom of life
groups shall be retrieved. See getKingdoms
for details.
# get possible kigdom names
getKingdoms(db = "refseq")
#> [1] "archaea" "bacteria" "fungi"
#> [4] "invertebrate" "plant" "protozoa"
#> [7] "vertebrate_mammalian" "vertebrate_other" "viral"
if (FALSE) {
# retrieve subgroups for vertebrate_mammalian available from refseq
getGroups(db = "refseq", kingdom = "vertebrate_mammalian")
# get possible kigdom names
getKingdoms(db = "genbank")
# retrieve subgroups for vertebrate_mammalian available from genbank
getGroups(db = "genbank", kingdom = "vertebrate_mammalian")
}