Users can retrieve the available number of sequenced
genomes per group. Only available for db = "refseq"
and
db = "genbank"
.
listGroups(db = "refseq", kingdom = "all", details = FALSE)
a character string specifying the database for which genome availability shall be checked. Available options are:
db = "refseq"
db = "genbank"
a kingdom specification retrieved by
getKingdoms
.
shall all species corresponding to the specified
kingdom
be returned? Default is details = FALSE
.
if (FALSE) {
# example for refseq
listGroups(db = "refseq")
# example for genbank
listGroups(db = "genbank")
### in case groups should be specified by kingdom
# first, retrieve available kingdom names
listKingdoms()
# now we choose kingdom "bacteria"
listGroups(db = "refseq", kingdom = "bacteria")
# or
listGroups(db = "genbank", kingdom = "bacteria")
}