neuroimaGene: Transcriptomic Atlas of Neuroimaging Derived Phenotypes

Contains functions to query and visualize the Neuroimaging features associated with genetically regulated gene expression (GReX). The primary utility, neuroimaGene(), relies on a list of user-defined genes and returns a table of neuroimaging features (NIDPs) associated with each gene. This resource is designed to assist in the interpretation of genome-wide and transcriptome-wide association studies that evaluate brain related traits. Bledsoe (2024) <doi:10.1016/j.ajhg.2024.06.002>. In addition there are several visualization functions that generate summary plots and 2-dimensional visualizations of regional brain measures. Mowinckel (2020).

Version: 0.1.1
Depends: R (≥ 3.5.0)
Imports: data.table, ggplot2, DBI, stringr, ggseg, RSQLite
Suggests: knitr, rmarkdown
Published: 2024-09-20
DOI: 10.32614/CRAN.package.neuroimaGene
Author: Xavier Bledsoe ORCID iD [aut, cre], Eric Gamazon ORCID iD [aut]
Maintainer: Xavier Bledsoe <xavier.bledsoe at vanderbilt.edu>
License: GPL (≥ 3)
NeedsCompilation: no
Citation: neuroimaGene citation info
CRAN checks: neuroimaGene results

Documentation:

Reference manual: neuroimaGene.pdf
Vignettes: neuroimaGene (source, R code)

Downloads:

Package source: neuroimaGene_0.1.1.tar.gz
Windows binaries: r-devel: neuroimaGene_0.1.1.zip, r-release: neuroimaGene_0.1.1.zip, r-oldrel: neuroimaGene_0.1.1.zip
macOS binaries: r-release (arm64): neuroimaGene_0.1.1.tgz, r-oldrel (arm64): neuroimaGene_0.1.1.tgz, r-release (x86_64): neuroimaGene_0.1.1.tgz, r-oldrel (x86_64): neuroimaGene_0.1.1.tgz
Old sources: neuroimaGene archive

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