inst/examples/run_all.R now writes figures to
tempdir() instead of the working directory, in line with
CRAN policy.\usage line in bk_diversity.Rd
to satisfy the Rd line-width check (CRAN incoming pre-test); no
user-visible change.inst/WORDLIST documenting the plant-breeding
terms flagged by the spell checker (all correct).bk_diallel() — Griffing (1956) diallel analysis,
Method 2 (parents + one set of F1s, no reciprocals), Model I (fixed):
combining-ability ANOVA (GCA, SCA), parental GCA effects, SCA matrix,
Baker’s predictability ratio and variance components. Standard errors
are computed exactly by propagating the per-entry error variance through
the linear estimators (no tabulated constants).bk_plot() gains a bk_diallel method: GCA
effect bars (default) and an SCA heatmap
(type = "sca").bk_data("diallel") — 6-parent half
diallel, 3 reps.bk_lxt() — Line x Tester combining-ability
analysis: combining-ability ANOVA (crosses partitioned into lines,
testers and line x tester), GCA effects for lines and testers, SCA
effects per cross, proportional contributions, and GCA/SCA variance
components with additive/dominance variances, average degree of
dominance and predictability ratio.bk_plot() gains a bk_lxt method: GCA
effect bars (default) and an SCA heatmap
(type = "sca").bk_data("lxt") — 5 lines x 3
testers, 3 replications.First release.
bk_rbd(), bk_frbd(),
bk_augmented() (Augmented Alpha-Lattice and Augmented
RCBD).bk_variability(),
bk_correlation(), bk_path(),
bk_diversity() (Mahalanobis D² with Tocher and Ward
clustering), bk_stability() (Eberhart-Russell + AMMI).bk_plot() verb returns a publication-ready
ggplot2 figure for every result, using the bespoke
theme_bk() and bk_palette() colour
system.bk_data().inst/examples/run_all.R.