Last updated on 2026-09-11 21:51:06 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.6.3 | 18.70 | 340.20 | 358.90 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.6.3 | 13.10 | 228.36 | 241.46 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.6.3 | 15.00 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.6.3 | 13.00 | 210.95 | 223.95 | OK | |
| r-devel-windows-x86_64 | 1.6.3 | 23.00 | 344.00 | 367.00 | OK | |
| r-patched-linux-x86_64 | 1.6.3 | 28.03 | 316.19 | 344.22 | OK | |
| r-release-linux-x86_64 | 1.6.3 | 17.53 | 315.61 | 333.14 | OK | |
| r-release-macos-arm64 | 1.6.3 | 4.00 | 96.00 | 100.00 | OK | |
| r-release-macos-x86_64 | 1.6.3 | 14.00 | 433.00 | 447.00 | OK | |
| r-release-windows-x86_64 | 1.6.3 | 23.00 | 360.00 | 383.00 | OK | |
| r-oldrel-macos-arm64 | 1.6.3 | OK | ||||
| r-oldrel-macos-x86_64 | 1.6.3 | 16.00 | 898.00 | 914.00 | OK | |
| r-oldrel-windows-x86_64 | 1.6.3 | 32.00 | 467.00 | 499.00 | OK |
Version: 1.6.3
Check: Rd contents
Result: NOTE
Rd files without \usage:
‘lcModel-class.Rd’
\arguments should not be documented without \usage.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.6.3
Check: examples
Result: ERROR
Running examples in ‘latrend-Ex.R’ failed
The error most likely occurred in:
> ### Name: lcMethodDtwclust
> ### Title: Specify time series clustering via dtwclust
> ### Aliases: lcMethodDtwclust
>
> ### ** Examples
>
> data(latrendData)
>
> if (require("dtwclust")) {
+ method <- lcMethodDtwclust("Y", id = "Id", time = "Time", nClusters = 3)
+ # reduced sample size to lower runtime
+ model <- latrend(method, latrendData[1:500, ])
+ }
Loading required package: dtwclust
Loading required package: proxy
Attaching package: ‘proxy’
The following objects are masked from ‘package:stats’:
as.dist, dist
The following object is masked from ‘package:base’:
as.matrix
Loading required package: dtw
Loaded dtw v1.23-3. See ?dtw for help, citation("dtw") for use in publication.
dtwclust:
Setting random number generator to L'Ecuyer-CMRG (see RNGkind()).
To read the included vignettes type: browseVignettes("dtwclust").
See news(package = "dtwclust") after package updates.
---------------------------------------------------------------------------
- Longitudinal clustering using: time series clustering with dtw_basic-dissimilarity
---------------------------------------------------------------------------
Method arguments:
time: "Time"
id: "Id"
nClusters: 3
type: "partitional"
preproc: NULL
distance: "dtw_basic"
centroid: ifelse(type == "fuzzy", "fcm", "pam")
control: do.call(paste0(type, "_control"), list()
args: tsclust_args()
seed: NULL
error.check: TRUE
response: "Y"
---------------------------------------------------------------------------
Checking and transforming the training data format.
Preparing the training data for fitting...
Fitting the method...
Precomputing distance matrix...
Error in initRefFields(.self, .refClassDef, as.environment(.self), list(...)) :
could not find function "initRefFields"
Calls: latrend ... initialize -> <Anonymous> -> callSuper -> initFields
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.6.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘demo.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘demo.Rmd’
--- re-building ‘implement.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘implement.Rmd’
--- re-building ‘simulation.Rmd’ using rmarkdown
Quitting from simulation.Rmd:179-185 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `initRefFields()`:
! could not find function "initRefFields"
---
Backtrace:
▆
1. └─simTool::eval_tibbles(...)
2. ├─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. └─base::lapply(...)
5. └─simTool (local) FUN(X[[i]], ...)
6. └─simTool (local) sim_fun(fc)
7. └─base::lapply(1:replications, with_data)
8. └─simTool (local) FUN(X[[i]], ...)
9. └─base::lapply(...)
10. └─simTool (local) FUN(X[[i]], ...)
11. ├─simTool (local) post_analyze(f(data, truth), truth)
12. │ └─global f(x)
13. │ └─latrend::model.data(model)
14. └─simTool (local) f(data, truth)
15. ├─base::do.call(fp$fun, fp$para)
16. └─latrend (local) `<fn>`(...)
17. └─latrend:::.fitLatrendMethod(...)
18. ├─latrend (local) suppressFun(...)
19. │ ├─utils::capture.output(suppressMessages(...))
20. │ │ └─base::withVisible(...elt(i))
21. │ └─base::suppressMessages(...)
22. │ └─base::withCallingHandlers(...)
23. ├─latrend::fit(...)
24. └─latrend::fit(...)
25. ├─base::do.call(dtwclust::tsclust, args)
26. └─dtwclust (local) `<fn>`(...)
27. └─dtwclust:::pam_distmat(...)
28. └─methods::as(...)
29. └─dtwclust (local) asMethod(object)
30. └─DistmatLowerTriangular$new(distmat = from)
31. └─methods::new(def, ...)
32. ├─methods::initialize(value, ...)
33. └─methods::initialize(value, ...)
34. └─.Object$initialize(...)
35. └─dtwclust (local) callSuper(..., distmat = distmat)
36. └─dtwclust (local) initFields(..., distmat = distmat)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'simulation.Rmd' failed with diagnostics:
could not find function "initRefFields"
--- failed re-building ‘simulation.Rmd’
SUMMARY: processing the following file failed:
‘simulation.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang