2f226c71ff5ae6ce9ebdfc9db4a02f4b *DESCRIPTION
5865700701ef09543b7f2d56f7adb619 *NAMESPACE
19b4e919eea728df0f9091c59779c376 *NEWS.md
5d87448a17b251d2119a1fca925402a6 *R/Clustering.R
71c11ba289d1a95d9df6270ee0bcf97b *R/RcppExports.R
1d09ce413d81eee6993fc0480e474d41 *R/genetic_algorithm_helpers.R
122374a319ab8ad8ebcfbcff993f4b5c *R/pwp_rao.R
998b45a73aa35c0e3e4fb5ccad7f97cc *R/test-helpers.R
f7c0c4be94039c555e87d2dae446aedd *R/treehunt-package.R
7dfd795d5dbfce2e72d9adcd7c08e580 *R/uniform_reference.R
ebbdec4e5ede46726fcc19bd2b8854de *README.md
de651414950b30d8175822795cdd1aaf *man/aggregate_ga_results.Rd
6c71088dd550c1e5897d9d41644da6d2 *man/clustering_genetic_algorithm.Rd
51963fee3294db751b44a82b016d8a63 *man/compute_score.Rd
20025f26778fd710e80f7532c84a7b17 *man/decode_treehunt_solutions.Rd
d0f5d138497e760e0c321009426c046f *man/filter_out_cocktails.Rd
369d65d582613d751c07b25f66b08b3a *man/fit_pwp_rao_context.Rd
86ce371b89b5e5b13dd77d7c1d204021 *man/get_dissimilarity_of_list.Rd
3e653544eebaa12e7da2a871d4e15bba *man/get_taker.Rd
6e03dd380f560f69a61235eed0c4788b *man/map_cocktail_names.Rd
e1b98bbcb7eedc3538378c1637d8c5a9 *man/mcmc_size_2_true_score_distribution.Rd
d9adb6668ce59319d1b022082e04b0ae *man/plot_ga_clusters.Rd
c1d287b6ee728debf2abd1d227edfdd2 *man/process_ga_scores.Rd
4dac80acbee2fd831e08fb51cc87831f *man/pwp_combination_flag_cpp.Rd
592f8c1d906d53fd5cec452e63a51adb *man/refit_pwp_combinations.Rd
8b57e30769a1e9a7db7df4047a7fa554 *man/run_ga_batch.Rd
ebae0086dc9341328428db16d1c3654b *man/run_genetic_algorithm.Rd
6f9f23e5a0aa375e0c078fac59795484 *man/run_genetic_algorithm_df_tree.Rd
6083c3f3e928ead2db49505a819e9156 *man/run_genetic_algorithm_pwp_cpp.Rd
35f1a9b2426c89c392eea164dc2ba658 *man/run_mcmc.Rd
5d6b42ce1e4136a755f4cf8b9ebc043d *man/run_mcmc_df_tree.Rd
10d2ac55c61c632cfcaa4ad3b6f7c299 *man/run_mcmc_pwp_cpp.Rd
34f4a4a23ed653420088f4f17c6317ce *man/run_pwp_genetic_algorithm.Rd
5b3f5786250a3c35a0a4e7d44d9ac275 *man/run_pwp_mcmc.Rd
0f97a05f354f06a223b8e6f00d60e371 *man/score_pwp_combinations.Rd
d56f13949092ae823e857673b51a1878 *man/score_pwp_combinations_cpp.Rd
49e31d375ee4b2691850b2f19a8791a9 *man/summarize_ga_pipeline.Rd
d06d0534d5818065fe70c063820ea99e *man/treehunt-package.Rd
14116dd239d90f41a2dad5cd8ad83b04 *man/uniform_score_reference.Rd
3114d4b00877d267d8000dc5a2d73af7 *man/weight_ess.Rd
71bb4c4f28f5d3848bf38b85526d55b3 *src/Makevars
80bc113df0ad7f547ffc4813664e2ce5 *src/RcppExports.cpp
cc2d0383c1b5777152d094670d0ca983 *src/genetic_algorithm.cpp
2e3dc5929562c6f2b8527cc5c8ec4daa *src/genetic_algorithm.h
264508a252aee656c1397622fc89ab43 *src/helpers.cpp
1688adae99168a71d6565cc12e4825d8 *src/helpers.h
55183aa047f1a9677c9b8bcebafb3979 *src/mcmc_algorithm.cpp
70378bf1d35a56eb0a6bc78d9432d983 *src/mcmc_algorithm.h
fc3821a224b0f30b716dcd959c3728e3 *src/mcmc_output.h
6e0d4dd9028fa19ecf3a11c96f018f37 *src/patient_data.cpp
971fbb319964f5dc625a3636b2017f49 *src/patient_data.h
6bcb6ee94b12da536ad9f74ea118278a *src/patient_data_test.cpp
3f7bfc66f5f8bb94af359ec6a3afe05c *src/pwp_exports.cpp
be947b9ecead3982fe6508cc74b65189 *src/pwp_score.cpp
459064ebeec22de238b52b30dda9db5e *src/pwp_score.h
be0cd2c6edbd2d2daea58a8e8dfcdaee *src/score_functions.h
0e8750d4423a2acf652d1a0447f5cd84 *src/solution.cpp
61562325d36f34f441d00d8fc34457a1 *src/solution.h
ecf179885810cc071d75ce60b31d7f8e *src/solution_test.cpp
988d843d02c3bc5043fa195c756eff85 *src/tree_structure.cpp
2c7fd44a9c498fa4b2b3f89359416ab5 *src/tree_structure.h
6b906b8a4be71ecc311731e9887c7c0a *src/tree_test_exports.cpp
9e139c458a2759be4da11adc4f70d90a *src/treehunt.cpp
bc7477565edac797816ed6aa2bd6794b *src/uniform_reference.h
b62b974d8efc91f3af428e6b6d2c5d55 *tests/testthat.R
7f5deef0f408c728b0f63cc1ef55047f *tests/testthat/test_algorithm_controls.R
db66ab85e58f64744fc674561c3713a7 *tests/testthat/test_clustering.R
ae6494a42bb86eb77be238f4a1ed266b *tests/testthat/test_compute_score.R
275d4eb35bc39e10a37aa0879189e81e *tests/testthat/test_genetic_algorithm_helpers.R
5acb3cd79794b2466110d6c045e44d22 *tests/testthat/test_patient_data.R
d13275b79428461a26395e2f3c3fac16 *tests/testthat/test_pwp_rao.R
fa9c58345c908b6a0cf2ce6a741c5ec6 *tests/testthat/test_solution.R
32e7293d462f74f6f28c0571c36c6e1e *tests/testthat/test_tree_structure.R
bb5e718d01491a93779bc7ee9d98d2f7 *tests/testthat/test_uniform_reference.R
