% Generated by roxygen2 (4.1.1): do not edit by hand
% Please edit documentation in R/cor.dendlist.R
\name{cor_common_nodes}
\alias{cor_common_nodes}
\title{Proportion of commong nodes between two trees}
\usage{
cor_common_nodes(dend1, dend2, ...)
}
\arguments{
\item{dend1}{a dendrogram.}

\item{dend2}{a dendrogram.}

\item{...}{not used.}
}
\value{
A correlation value between 0 to 1 (almost identical trees)
}
\description{
Calculates the number of nodes, in each tree, that are common (i.e.: that have the same exact list of labels).
The correlation is between 0 (actually, 2*(nnodes-1)/(2*nnodes), for two trees with
the same list of labels - since the top node will always be identical for them).
Where 1 means that every node in the one tree, has a node in the other tree with the exact
same list of labels.
Notice this measure is non-parameteric (it ignores the heights and relative position of the nodes).
}
\examples{
set.seed(23235)
ss <- sample(1:150, 10 )
hc1 <- iris[ss,-5] \%>\% dist \%>\% hclust("com")
hc2 <- iris[ss,-5] \%>\% dist \%>\% hclust("single")
dend1 <- as.dendrogram(hc1)
dend2 <- as.dendrogram(hc2)

cor_cophenetic(dend1, dend2)
cor_common_nodes(dend1, dend2)
tanglegram(dend1, dend2)
# we can see we have only two nodes which are different...
}
\seealso{
\link{distinct_edges}, \link{cor.dendlist}
}

