% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/motifs-api.R
\name{subgraphs}
\alias{subgraphs}
\title{Extract Specific Motif Instances (Subgraphs)}
\usage{
subgraphs(...)
}
\arguments{
\item{...}{Additional arguments passed to plot helpers.}
}
\value{
Same as \code{\link{motifs}}. See that function for details.
}
\description{
Convenience wrapper for \code{motifs(x, named_nodes = TRUE, ...)}. Returns
specific node triples forming each MAN pattern.
}
\examples{
mat <- matrix(c(0,3,2,0, 0,0,5,1, 0,0,0,4, 2,0,0,0), 4, 4, byrow = TRUE)
rownames(mat) <- colnames(mat) <- c("Plan","Execute","Monitor","Adapt")
subgraphs(mat, significance = FALSE)
}
\seealso{
\code{\link[=motifs]{motifs()}}

Other motifs: 
\code{\link{extract_motifs}()},
\code{\link{extract_triads}()},
\code{\link{get_edge_list}()},
\code{\link{motif_census}()},
\code{\link{motifs}()},
\code{\link{plot.cograph_motif_analysis}()},
\code{\link{plot.cograph_motifs}()},
\code{\link{triad_census}()}
}
\concept{motifs}
