@Manual{R-agricolae,
  title = {agricolae: Statistical Procedures for Agricultural Research},
  author = {Felipe {de Mendiburu}},
  year = {2020},
  note = {R package version 1.3-3},
  url = {https://CRAN.R-project.org/package=agricolae},
}

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2020},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2020},
  note = {R package version 0.20},
  url = {https://CRAN.R-project.org/package=bookdown},
}

@Manual{R-citr,
  title = {citr: RStudio Add-in to Insert Markdown Citations},
  author = {Frederik Aust},
  year = {2019},
  note = {R package version 0.3.2},
  url = {https://github.com/crsh/citr},
}

@Manual{R-cowplot,
  title = {cowplot: Streamlined Plot Theme and Plot Annotations for 'ggplot2'},
  author = {Claus O. Wilke},
  year = {2019},
  note = {R package version 1.0.0},
  url = {https://CRAN.R-project.org/package=cowplot},
}

@Manual{R-devtools,
  title = {devtools: Tools to Make Developing R Packages Easier},
  author = {Hadley Wickham and Jim Hester and Winston Chang},
  year = {2020},
  note = {R package version 2.3.0},
  url = {https://CRAN.R-project.org/package=devtools},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller},
  year = {2020},
  note = {R package version 1.0.0},
  url = {https://CRAN.R-project.org/package=dplyr},
}

@Manual{R-emmeans,
  title = {emmeans: Estimated Marginal Means, aka Least-Squares Means},
  author = {Russell Lenth},
  year = {2020},
  note = {R package version 1.4.8},
  url = {https://CRAN.R-project.org/package=emmeans},
}

@Manual{R-FactoMineR,
  title = {FactoMineR: Multivariate Exploratory Data Analysis and Data Mining},
  author = {Francois Husson and Julie Josse and Sebastien Le and Jeremy Mazet},
  year = {2020},
  note = {R package version 2.3},
  url = {https://CRAN.R-project.org/package=FactoMineR},
}

@Manual{R-forcats,
  title = {forcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2020},
  note = {R package version 0.5.0},
  url = {https://CRAN.R-project.org/package=forcats},
}

@Manual{R-GerminaR,
  title = {GerminaR: Indices and Graphics for Assess Seed Germination Process},
  author = {Flavio {Lozano Isla} and Omar {Benites Alfaro} and Marcelo F. Pompelli},
  year = {2020},
  note = {R package version 1.4.2},
  url = {https://CRAN.R-project.org/package=GerminaR},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2020},
  note = {R package version 3.3.2},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-googledrive,
  title = {googledrive: An Interface to Google Drive},
  author = {Lucy {D'Agostino McGowan} and Jennifer Bryan},
  year = {2020},
  note = {R package version 1.0.1},
  url = {https://CRAN.R-project.org/package=googledrive},
}

@Manual{R-googlesheets4,
  title = {googlesheets4: Access Google Sheets using the Sheets API V4},
  author = {Jennifer Bryan},
  year = {2020},
  note = {R package version 0.2.0},
  url = {https://CRAN.R-project.org/package=googlesheets4},
}

@Manual{R-heatmaply,
  title = {heatmaply: Interactive Cluster Heat Maps Using 'plotly'},
  author = {Tal Galili and Alan O'Callaghan},
  year = {2020},
  note = {R package version 1.1.0},
  url = {https://CRAN.R-project.org/package=heatmaply},
}

@Manual{R-inti,
  title = {inti: Tools and Statistical Procedures in Plant Science},
  author = {Flavio Lozano-Isla},
  year = {2020},
  note = {R package version 2.0.0},
  url = {https://lozanoisla.com/},
}

@Manual{R-jpeg,
  title = {jpeg: Read and write JPEG images},
  author = {Simon Urbanek},
  year = {2019},
  note = {R package version 0.1-8.1},
  url = {https://CRAN.R-project.org/package=jpeg},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2020},
  note = {R package version 1.29.1},
  url = {https://yihui.org/knitr/},
}

@Manual{R-lme4,
  title = {lme4: Linear Mixed-Effects Models using 'Eigen' and S4},
  author = {Douglas Bates and Martin Maechler and Ben Bolker and Steven Walker},
  year = {2020},
  note = {R package version 1.1-23},
  url = {https://CRAN.R-project.org/package=lme4},
}

@Manual{R-lmerTest,
  title = {lmerTest: Tests in Linear Mixed Effects Models},
  author = {Alexandra Kuznetsova and Per {Bruun Brockhoff} and Rune {Haubo Bojesen Christensen}},
  year = {2020},
  note = {R package version 3.1-2},
  url = {https://CRAN.R-project.org/package=lmerTest},
}

@Manual{R-Matrix,
  title = {Matrix: Sparse and Dense Matrix Classes and Methods},
  author = {Douglas Bates and Martin Maechler},
  year = {2019},
  note = {R package version 1.2-18},
  url = {https://CRAN.R-project.org/package=Matrix},
}

@Manual{R-plotly,
  title = {plotly: Create Interactive Web Graphics via 'plotly.js'},
  author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
  year = {2020},
  note = {R package version 4.9.2.1},
  url = {https://CRAN.R-project.org/package=plotly},
}

@Manual{R-png,
  title = {png: Read and write PNG images},
  author = {Simon Urbanek},
  year = {2013},
  note = {R package version 0.1-7},
  url = {https://CRAN.R-project.org/package=png},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Lionel Henry and Hadley Wickham},
  year = {2020},
  note = {R package version 0.3.4},
  url = {https://CRAN.R-project.org/package=purrr},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Romain Francois},
  year = {2018},
  note = {R package version 1.3.1},
  url = {https://CRAN.R-project.org/package=readr},
}

@Manual{R-shiny,
  title = {shiny: Web Application Framework for R},
  author = {Winston Chang and Joe Cheng and JJ Allaire and Yihui Xie and Jonathan McPherson},
  year = {2020},
  note = {R package version 1.5.0.9001},
  url = {http://shiny.rstudio.com},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.4.0},
  url = {https://CRAN.R-project.org/package=stringr},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2020},
  note = {R package version 3.0.3},
  url = {https://CRAN.R-project.org/package=tibble},
}

@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Lionel Henry},
  year = {2020},
  note = {R package version 1.1.0},
  url = {https://CRAN.R-project.org/package=tidyr},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the 'Tidyverse'},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.3.0},
  url = {https://CRAN.R-project.org/package=tidyverse},
}

@Manual{R-usethis,
  title = {usethis: Automate Package and Project Setup},
  author = {Hadley Wickham and Jennifer Bryan},
  year = {2020},
  note = {R package version 1.6.1},
  url = {https://CRAN.R-project.org/package=usethis},
}

@Manual{R-viridis,
  title = {viridis: Default Color Maps from 'matplotlib'},
  author = {Simon Garnier},
  year = {2018},
  note = {R package version 0.5.1},
  url = {https://CRAN.R-project.org/package=viridis},
}

@Manual{R-viridisLite,
  title = {viridisLite: Default Color Maps from 'matplotlib' (Lite Version)},
  author = {Simon Garnier},
  year = {2018},
  note = {R package version 0.3.0},
  url = {https://CRAN.R-project.org/package=viridisLite},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://github.com/rstudio/bookdown},
}

@Article{FactoMineR2008,
  title = {{FactoMineR}: A Package for Multivariate Analysis},
  author = {S\'ebastien L\^e and Julie Josse and Fran\c{c}ois Husson},
  journal = {Journal of Statistical Software},
  year = {2008},
  volume = {25},
  number = {1},
  pages = {1--18},
  doi = {10.18637/jss.v025.i01},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Article{heatmaply2017,
  author = {{Galili} and {Tal} and {O'Callaghan} and {Alan} and {Sidi} and {Jonathan} and {Sievert} and {Carson}},
  title = {heatmaply: an R package for creating interactive cluster heatmaps for online publishing},
  journal = {Bioinformatics},
  year = {2017},
  doi = {10.1093/bioinformatics/btx657},
  url = {http://dx.doi.org/10.1093/bioinformatics/btx657},
  eprint = {https://academic.oup.com/bioinformatics/article-pdf/doi/10.1093/bioinformatics/btx657/21358327/btx657.pdf},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Article{lme42015,
  title = {Fitting Linear Mixed-Effects Models Using {lme4}},
  author = {Douglas Bates and Martin M{\"a}chler and Ben Bolker and Steve Walker},
  journal = {Journal of Statistical Software},
  year = {2015},
  volume = {67},
  number = {1},
  pages = {1--48},
  doi = {10.18637/jss.v067.i01},
}

@Article{lmerTest2017,
  title = {{lmerTest} Package: Tests in Linear Mixed Effects Models},
  author = {Alexandra Kuznetsova and Per B. Brockhoff and Rune H. B. Christensen},
  journal = {Journal of Statistical Software},
  year = {2017},
  volume = {82},
  number = {13},
  pages = {1--26},
  doi = {10.18637/jss.v082.i13},
}

@Book{plotly2020,
  author = {Carson Sievert},
  title = {Interactive Web-Based Data Visualization with R, plotly, and shiny},
  publisher = {Chapman and Hall/CRC},
  year = {2020},
  isbn = {9781138331457},
  url = {https://plotly-r.com},
}

@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}

