% Encoding: ISO8859_1

@Article{Castro2012,
author = {Mauro AA Castro and Xin Wang and Michael NC Fletcher and Kerstin B Meyer and Florian Markowetz},
title = {RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations.},
journal = {Genome Biology},
year = {2012},
volume = {13},
pages = {R29},
number = {4},
doi = {10.1186/gb-2012-13-4-r29}
}

@Article{Ellrott2025,
author = {Kyle Ellrott and Christopher K Wong and Christina Yau and Mauro A A Castro and others},
title = {Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets.},
journal = {Cancer Cell},
year = {2025},
volume = {43},
pages = {195--212},
number = {2},
doi = {10.1016/j.ccell.2024.12.002}
}

@Article{Tercan2025,
author = {Bahar Tercan and Victor H Apolonio and Vinicius S Chagas and Christopher K Wong and others},
title = {Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets.},
journal = {Cancer Cell},
year = {2025},
volume = {43},
pages = {195--212},
number = {2},
doi = {https://doi.org/10.1016/j.xpro.2025.103681}
}

@Article{Liberzon2015,
author = {Arthur Liberzon and Chet Birger and Helga Thorvaldsdottir and Mahmoud Ghandi and Jill Mesirov and Pablo Tamayo},
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journal = {Cell Systems},
year = {2015},
volume = {1},
pages = {417--425},
number = {5},
doi = {10.1016/j.cels.2015.12.004}
}

@Article{igraph,
title = {The igraph software package for complex network research},
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year = {2006},
url = {http://igraph.sf.net},
}

@Article{Weibull2018,
    author = {Kızılersü, Ayşe and Kreer, Markus and Thomas, Anthony W.},
    title = "{The Weibull Distribution}",
    journal = {Significance},
    volume = {15},
    number = {2},
    pages = {10-11},
    year = {2018},
    month = {04},
    abstract = "{Ayşe Kızılersü, Markus Kreer and Anthony W. Thomas introduce a statistical distribution that helps scientists cope with the hazards of life}",
    issn = {1740-9705},
    doi = {10.1111/j.1740-9713.2018.01123.x},
    url = {https://doi.org/10.1111/j.1740-9713.2018.01123.x},
    eprint = {https://academic.oup.com/jrssig/article-pdf/15/2/10/49185942/sign\_15\_2\_10.pdf},
}

@misc{Linear2023,
      title={Linear programming bounds for hyperbolic surfaces},
      author={Maxime Fortier Bourque and Bram Petri},
      year={2023},
      eprint={2302.02540},
      archivePrefix={arXiv},
      primaryClass={math.GT}
}

@Inbook{Exponential2017,
author="Beebe, Nelson H. F.",
title="Exponential and logarithm",
bookTitle="The Mathematical-Function Computation Handbook: Programming Using the MathCW Portable Software Library",
year="2017",
publisher="Springer International Publishing",
address="Cham",
pages="267--298",
abstract="The exponential function, and its inverse, the logarithm function, are two of the most fundamental elementary functions in all of mathematics, and in numerical computing. They also turn up hidden inside other important functions, such as the hyperbolic functions, the power function, and in the computation of interest and investment value, and lottery returns, in financial mathematics, a subject that we treat briefly at the end of this chapter.",
isbn="978-3-319-64110-2",
doi="10.1007/978-3-319-64110-2_10",
url="https://doi.org/10.1007/978-3-319-64110-2_10"
}

@article{Rodchenkov2019,
author = {Rodchenkov, Igor and Babur, Ozgun and Luna, Augustin and Aksoy, Bulent Arman and Wong, Jeffrey V and Fong, Dylan and Franz, Max and Siper, Metin Can and Cheung, Manfred and Wrana, Michael and Mistry, Harsh and Mosier, Logan and Dlin, Jonah and Wen, Qizhi and O’Callaghan, Caitlin and Li, Wanxin and Elder, Geoffrey and Smith, Peter T and Dallago, Christian and Cerami, Ethan and Gross, Benjamin and Dogrusoz, Ugur and Demir, Emek and Bader, Gary D and Sander, Chris},
title = "{Pathway Commons 2019 Update: integration, analysis and exploration of pathway data}",
journal = {Nucleic Acids Research},
volume = {48},
number = {D1},
pages = {D489-D497},
year = {2019},
month = {10},
issn = {0305-1048},
doi = {10.1093/nar/gkz946},
url = {https://doi.org/10.1093/nar/gkz946},
eprint = {https://academic.oup.com/nar/article-pdf/48/D1/D489/31697764/gkz946.pdf},
}

