@Article{AldorNoimanEtal2013,
  Author = {Aldor-Noiman, S. and Brown, L. D. and Buja, A. and Rolke, W. and Stine, R. A.},
  Title = {The Power to See: A New Graphical Test of Normality},
  Journal = {The American Statistician},
  Year = {2013},
  Volume = {67},
  Number = {4},
  Pages = {249--260},
  publisher = {Taylor \& Francis},
  doi = {10.1080/00031305.2013.847865}
}

@article{BaddeleyEtal2017,
  author = {Baddeley, Adrian and Hardegen, Andrew and Lawrence, Thomas and Milne, Robin K. and Nair, Gopalan and Rakshit, Suman},
  title = {On Two-Stage Monte Carlo Tests of Composite Hypotheses},
  journal = {Computational Statistics \& Data Analysis},
  volume = {114},
  pages = {75--87},
  year = {2017},
  doi = {https://doi.org/10.1016/j.csda.2017.04.003}
}

@Book{spatstat2015,
  author = {Adrian Baddeley and Ege Rubak and Rolf Turner},
  title = {Spatial Point Patterns: Methodology and Applications with \proglang{R}},
  year = {2015},
  publisher = {Chapman and Hall/CRC Press},
  address = {London}
}

@Article{Barnard1963,
  Title = {Discussion on 'The Spectral Analysis of Point Processes' (by M. S. Bartlett)},
  Author = {Barnard, G. A.},
  Journal = {Journal of the Royal Statistical Society B},
  Year = {1963},
  Pages = {294},
  Volume = {25}
}

@Article{Besag1977,
  Author = {Besag, J. E.},
  Title  = {Comment on `{Modelling Spatial Patterns}' by {B. D. Ripley}},
  Journal = {Journal of the Royal Statistical Society B},
  Year = {1977},
  Number = {2},
  Pages = {193--195},
  Volume = {39}
}

@article{BiscioMoller2019,
  author = {Biscio, Christophe A.N. and M{\o}ller, Jesper},
  title = {The Accumulated Persistence Function, a New Useful Functional Summary Statistic for Topological Data Analysis, With a View to Brain Artery Trees and Spatial Point Process Applications},
  journal = {Journal of Computational and Graphical Statistics},
  volume = {28},
  number = {3},
  pages = {671--681},
  year  = {2019},
  publisher = {Taylor \& Francis},
  doi = {10.1080/10618600.2019.1573686}
}

@Article{BolinLindgren2015,
  author = {Bolin, David and Lindgren, Finn},
  title = {Excursion and Contour Uncertainty Regions for Latent {Gaussian} Models},
  journal = {Journal of the Royal Statistical Society B},
  year = {2015},
  volume = {77},
  number = {1},
  pages = {85--106},
  doi = {10.1111/rssb.12055}
}

@Article{BolinLindgren2017,
  author = {Bolin, David and Lindgren, Finn},
  title = {Quantifying the Uncertainty of Contour Maps},
  journal = {Journal of Computational and Graphical Statistics},
  year = {2017},
  volume = {26},
  number = {3},
  pages = {513--524},
  doi = {10.1080/10618600.2016.1228537}
}

@article{BolinLindgren2018,
  author = {David Bolin and Finn Lindgren},
  title = {Calculating Probabilistic Excursion Sets and Related Quantities Using excursions},
  journal = {Journal of Statistical Software, Articles},
  volume = {86},
  number = {5},
  year = {2018},
  keywords = {excursion sets; contour maps; contour curves; simultaneous credible bands; Gaussian integrals; R},
  abstract = {The \proglang{R} software package excursions contains methods for calculating probabilistic excursion sets, contour credible regions, and simultaneous confidence bands for latent Gaussian stochastic processes and fields. It also contains methods for uncertainty quantification of contour maps and computation of Gaussian integrals. This article describes the theoretical and computational methods used in the package. The main functions of the package are introduced and two examples illustrate how the package can be used.},
  pages = {1--20},
  doi = {10.18637/jss.v086.i05},
}

@article{BrownEtal2020,
  author = {Brown, Patrick and Rai, Kamal and La Vecchia, Carlo and Rodriguez, Peter S and Qu, Kathleen and Brown, Mathew G and Shin, Hwashin Hyun and Tang, Xuyang and Newcombe, Leslie and Suraweera, Wilson and Schultz, Craig and Bogoch, Isaac and Gelband, Hellen and Nagelkerke, Nico and Jha, Prabhat},
  title = {Mortality from COVID-19 in 12 Countries and 6 States of the United States},
  elocation-id = {2020.04.17.20069161},
  year = {2020},
  journal = {medRxiv},
  doi = {10.1101/2020.04.17.20069161}
}

@Manual{boot2017,
  author = {Canty, Angelo and Ripley, Brian},
  title = {\pkg{boot}: Bootstrap \proglang{R} (\proglang{S-PLUS}) Functions},
  year = {2017},
  note = {\proglang{R}~package version~1.3-20},
  url = {https://cran.r-project.org/package=boot}
}

@article{ChaibanEtal2019,
  author = {Chaiban, Celia and Biscio, Christophe and Thanapongtharm, Weerapong and Tildesley, Michael and Xiao, Xiangming and Robinson, Timothy P. and Vanwambeke, Sophie O. and Gilbert, Marius},
  title = {Point Pattern Simulation Modelling of Extensive and Intensive Chicken Farming in Thailand: Accounting for Clustering and Landscape Characteristics},
  journal = {Agricultural Systems},
  volume = {173},
  pages = {335--344},
  year = {2019},
  doi = {https://doi.org/10.1016/j.agsy.2019.03.004},
  keywords = {Agricultural intensification, Point pattern analysis, Farm distribution model, Livestock production systems}
}

@Book{Christensen2002,
  Author = {Christensen, R.},
  Title = {Plane Answers to Complex Questions: The Theory of Linear Models},
  Publisher = {Springer-Verlag},
  Year = {2002},
  Address = {New York}
}

@Article{ClarkEtal2018,
  author = {Clark, Chris D. and Ely, Jeremy C. and Spagnolo, Matteo and Hahn, Ute and Hughes, Anna L.C. and Stokes, Chris R.},
  title = {Spatial Organization of Drumlins},
  journal = {Earth Surface Processes and Landforms},
  year = {2018},
  volume = {43},
  number = {2},
  pages = {499--513},
  keywords = {drumlins, patterning, regularity, sub-glacial bedforms, self-organization},
  doi = {10.1002/esp.4192}
}

@Manual{sgof2016,
  title = {\pkg{sgof}: Multiple Hypothesis Testing},
  author = {Irene Castro Conde and Jacobo de Una Alvarez},
  year = {2016},
  note = {\proglang{R}~package version~2.3},
  url = {https://CRAN.R-project.org/package=sgof}
}

@article{DaiGenton2018,
  author = {Dai, Wenlin and Genton, Marc G.},
  title = {Functional Boxplots for Multivariate Curves},
  journal = {Stat},
  year = {2018},
  volume = {7},
  number = {1},
  pages = {e190},
  keywords = {directional outlyingness, functional boxplot, multivariate functional data, outlier detection, visualization, visuanimation},
  doi = {10.1002/sta4.190},
}

@Article{DaiEtal2020,
  Author = {Dai, Wenlin and Mrkvi\v{c}ka, Tomas and Sun, Ying and Genton, Marc G.},
  Title = {Functional Outlier Detection and Taxonomy by Sequential Transformations},
  Journal = {Computational Statistics \& Data Analysis},
  Year = {2020},
  Volume = {149},
  Pages = {106960},
  doi = {https://doi.org/10.1016/j.csda.2020.106960}
}

@Article{DaoGenton2014,
  Author = {Dao, N. A. and Genton, M. G.},
  Title = {A {Monte Carlo} Adjusted Goodness-Of-Fit Test for Parametric Models Describing Spatial Point Patterns},
  Journal = {Journal of Computational and Graphical Statistics},
  Year = {2014},
  Pages = {497--517},
  Volume = {23},
  Doi = {10.1080/10618600.2012.760459},
  Issue = {2}
}

@Book{DavisonHinkley1997,
  Author = {Davison, A. C. and Hinkley, D. V.},
  Title = {Bootstrap Methods and Their Application},
  Publisher = {Cambridge University Press},
  Year = {1997},
  Address = {Cambridge}
}

@Manual{SCBmeanfd2016,
  author = {Degras, David},
  title = {\pkg{SCBmeanfd}: Simultaneous Confidence Bands for the Mean of Functional Data},
  year = {2016},
  note = {\proglang{R}~package version~1.2.2},
  url = {https://CRAN.R-project.org/package=SCBmeanfd}
}

@article{DespresEtal2017,
  author = {Despr{\'e}s, T. and V{\'i}tkov{\'a}, L. and Ba{\v c}e, R. and {\v C}ada, V. and Janda, P. and Mikol{\'a}{\v s}, M. and Schurman, J. S. and Trotsiuk, V. and Svoboda, M.},
  title = {Past Disturbances and Intraspecific Competition as Drivers of Spatial Pattern in Primary Spruce Forests},
  journal = {Ecosphere},
  year = {2017},
  volume = {8},
  number = {12},
  pages = {e02037},
  keywords = {density-dependent mortality, disturbance history, intraspecific competition, Picea abies, spatial pattern},
  doi = {10.1002/ecs2.2037}
}

@Article{Diggle1979,
  Title = {On Parameter Estimation and Goodness-of-Fit Testing for Spatial Point Patterns},
  Author = {Diggle, Peter J.},
  Journal = {Biometrics},
  Year = {1979},
  Volume = {35},
  Number = {1},
  Pages = {87--101},
  Doi = {10.2307/2529938}
}

@Book{Diggle2013a,
  Author = {Diggle, Peter J.},
  Title = {Statistical Analysis of Spatial and Spatio-Temporal Point Patterns},
  Publisher = {CRC Press},
  Year = {2013},
  Edition = {3},
  ISBN = {978-0-340-74070-5},
  Lccn = {0051},
  Address = {Boca Raton}
}

@Article{DurantonOverman2005,
  Author = {Duranton, Gilles and Overman, Henry G.},
  Title = {Testing for Localization Using Micro-Geographic Data},
  Journal = {Review of Economic Studies},
  Year = {2005},
  Number = {4},
  Pages = {1077--1106},
  Volume = {72}
}

@article{ErfanifardEtal2019,
  author = {Erfanifard, Yousef and Stere{\'n}czak, Krzysztof and Mi{\'s}cicki, Stanislaw},
  title = {Management Strategies Alter Competitive Interactions and Structural Properties of Norway Spruce in Mixed Stands of Bialowie\.{z}a Forest, Poland},
  journal = {Forest Ecology and Management},
  volume = {437},
  pages = {87--98},
  year = {2019},
  doi = {https://doi.org/10.1016/j.foreco.2019.01.035},
  keywords = {Density correlation function, Gini coefficient, Management strategy, Old-growth forest, Point pattern analysis}
}

@article{FebreroEtal2008,
  author = {Febrero, Manuel and Galeano, Pedro and Gonz{\'a}lez-Manteiga, Wenceslao},
  title = {Outlier Detection in Functional Data by Depth Measures, with Application to Identify Abnormal {NOx} Levels},
  journal = {Environmetrics},
  year = {2008},
  volume = {19},
  number = {4},
  pages = {331--345},
  keywords = {depths, functional median, functional trimmed mean, nitrogen oxides, outliers, smoothed bootstrap},
  doi = {10.1002/env.878},
}

@Article{fdausc2012,
  author = {Manuel Febrero-Bande and Manuel {Oviedo de la Fuente}},
  title = {Statistical Computing in Functional Data Analysis: The \proglang{R} Package \pkg{fda.usc}},
  journal = {Journal of Statistical Software, Articles}, 
  year = {2012},
  volume = {51},
  number = {4},
  pages = {1--28},
  doi = {10.18637/jss.v051.i04}
}

@ARTICLE{FreedmanLane1983,
  author = {Freedman, David and Lane, David},
  title = {A Nonstochastic Interpretation of Reported Significance Levels},
  journal = {Journal of Business and Economic Statistics},
  year = {1983},
  volume = {1},
  number = {4},
  pages = {292--298},
  doi = {10.2307/1391660}
}

@Manual{fdANOVA2017,
    author = {Tomasz Gorecki and Lukasz Smaga},
    title = {\pkg{fdANOVA}: Analysis of Variance for Univariate and Multivariate Functional Data},
    year = {2017},
    note = {\proglang{R}~package version~0.1.0},
    url = {https://CRAN.R-project.org/package=fdANOVA}
}

@Article{GoreckiSmaga2015,
  Author = {G\'{o}recki, Tomasz and Smaga, Lukasz},
  Title = {A Comparison of Tests for the One-Way ANOVA Problem for Functional Data},
  Journal = {Computational Statistics},
  Year = {2015},
  volume = {30},
  number = {4},
  pages = {987--1010},
  doi = {10.1007/s00180-015-0555-0}
}

@article{GotovacEtal2016,
  author = {Gotovac, Vesna and Helisov{\'a}, Kate{\c r}ina and Ugrina, Ivo},
  title = {Assessing Dissimilarity of Random Sets through Convex Compact Approximations, Support Functions and Envelope Tests},
  journal = {Image Analysis \& Stereology},
  year = {2016},
  volume = {35},
  number = {3},
  pages = {181--193},
  doi = {https://doi.org/10.5566/ias.1490}
}

@Article{GrabarnikChiu2002,
  Author = {Grabarnik, P. and Chiu, S. N.},
  Title = {Goodness-of-Fit Test for Complete Spatial Randomness Against Mixtures of Regular and Clustered Spatial Point Processes},
  Journal = {Biometrika},
  Year = {2002},
  Number = {2},
  Pages = {411--421},
  Volume = {89}
}

@article{GusmanMEtal2018,
  author = {Gusm{\'a}n-M., Elizabeth and de la Cruz, Marcelino and Espinosa, Carlos Iv{\'a}n and Escudero, Adri{\'a}n},
  title = {Focusing on Individual Species Reveals the Specific Nature of Assembly Mechanisms in a Tropical Dry-Forest},
  journal = {Perspectives in Plant Ecology, Evolution and Systematics},
  volume = {34},
  pages = {94--101},
  year = {2018},
  doi = {https://doi.org/10.1016/j.ppees.2018.07.004},
  keywords = {ISAR, IPSVAR, IFDAR, Community assembly, Spatial ecology, Taxonomic diversity, Functional diversity, Phylogenetic diversity}
}

@article{HabelEtal2017,
  author = {H{\"a}bel, Henrike and Rajala, Tuomas and Marucci, Mariagrazia and Boissier, Catherine and Schladitz, Katja and Redenbach, Claudia and S{\"a}rkk{\"a}, Aila},
  title = {A Three-Dimensional Anisotropic Point Process Characterization for Pharmaceutical Coatings},
  journal = {Spatial Statistics},
  volume = {22},
  pages = {306--320},
  year = {2017},
  doi = {https://doi.org/10.1016/j.spasta.2017.05.003},
  keywords = {Inhomogeneity, -function, Lennard-Jones pair-potential function, Pairwise Gibbs process, Porous material}
}

@TechReport{Hahn2015,
  Author = {Hahn, Ute},
  Title = {A Note on Simultaneous Monte Carlo Tests},
  Institution = {Centre for Stochastic Geometry and advanced Bioimaging, Aarhus University},
  Year = {2015}
}

@article{coin2008,
  author = {Hothorn, Torsten and Hornik, Kurt and van de Wiel, Mark and Zeileis, Achim},
  title = {Implementing a Class of Permutation Tests: The \pkg{coin} Package},
  journal = {Journal of Statistical Software, Articles},
  volume = {28},
  number = {8},
  year = {2008},
  pages = {1--23},
  doi = {10.18637/jss.v028.i08}
}

@article{HothornEtal2006,
  author = {Hothorn, Torsten and Hornik, Kurt and van de Wiel, Mark A and Zeileis, Achim},
  title = {A Lego System for Conditional Inference},
  journal = {The American Statistician},
  volume = {60},
  number = {3},
  pages = {257--263},
  year  = {2006},
  publisher = {Taylor & Francis},
  doi = {10.1198/000313006X118430}
}

@Book{IllianEtal2008,
  Author = {Illian, J. and Penttinen, A. and Stoyan, H. and Stoyan, D.},
  Title = {Statistical Analysis and Modelling of Spatial Point Patterns},
  Publisher = {John Wiley \& Sons},
  Year = {2008},
  Edition = {1},
  Series = {Statistics in Practice},
  ISBN = {978-0-470-01491-2},
  Address = {Chichester}
}

@Manual{fdrtool2015,
  author = {Klaus, Bernd and Strimmer, Korbinian},
  title = {\pkg{fdrtool}: Estimation of (Local) False Discovery Rates and Higher Criticism},
  year = {2015},
  note = {\proglang{R}~package version~1.2.15},
  url = {https://CRAN.R-project.org/package=fdrtool}
}

@article{KoubekEtal2016,
  author = {Koubek, Anton{\'i}n and Pawlas, Zbyn\v ek and Brereton, Tim and Kriesche, Bj{\"o}rn and Schmidt, Volker},
  title = {Testing the Random Field Model Hypothesis for Random Marked Closed Sets},
  journal = {Spatial Statistics},
  volume = {16},
  pages = {118--136},
  year = {2016},
  doi = {https://doi.org/10.1016/j.spasta.2016.03.001}
}

@article{KruuseEtal2019,
  author = {Kruuse, M. and Tempel, E. and Kipper, R. and Stoica, R. S.},
  title = {Photometric Redshift Galaxies as Tracers of the Filamentary Network},
  DOI = {10.1051/0004-6361/201935096},
  journal = {Astronomy \& Astrophysics},
  year = {2019},
  volume = {625},
  pages = {A130},
}

@article{LeeEtal2017,
  author = {Lee, Ad{\'e}l and S{\"a}rkk{\"a}, Aila and Madhyastha, Tara M. and Grabowski, Thomas J.},
  title = {Characterizing Cross-Subject Spatial Interaction Patterns in Functional Magnetic Resonance Imaging Studies: A Two-Stage Point-Process Model},
  journal = {Biometrical Journal},
  year = {2017},
  volume = {59},
  number = {6},
  pages = {1352--1381},
  keywords = {Cross-subject interaction, Geyer saturation model, Misalignment in cross-subject functional signals, Multisubject fMRI studies, Spatial point process model},
  doi = {10.1002/bimj.201600212},
}

@InCollection{Lieshout2010,
  Author = {van Lieshout, Marie-Colette},
  Title = {Spatial Point Process Theory},
  Booktitle = {Handbook of Spatial Statistics},
  Publisher = {{CRC} Press},
  Year = {2010},
  Edition = {1},
  Editor = {Gelfand, Alan E. and Diggle, Peter J. and Fuentes, Montserrat and Guttorp, Peter},
  Series = {Handbooks of Modern Statistical Methods},
  Abstract = {Assembling a collection of very prominent researchers in the field, the Handbook of Spatial Statistics presents a comprehensive treatment of both classical and state-of-the-art aspects of this maturing area. It takes a unified, integrated approach to the material, providing cross-references among...},
  ISBN = {978-1-4200-7287-7},
  Lccn = {0051}
}

@Article{Lopez-PintadoRomo2009,
  Author = {L\'{o}pez-Pintado, Sara and Romo, Juan},
  Title = {On the Concept of Depth for Functional Data},
  Journal = {Journal of the American Statistical Association},
  Year = {2009},
  Number = {486},
  Pages = {718--734},
  Volume = {104},
  Doi = {10.1198/jasa.2009.0108}
}

@Article{MarconEtal2015,
  author = {Eric Marcon and St{\'e}phane Traissac and Florence Puech and Gabriel Lang},
  title = {Tools to Characterize Point Patterns: \pkg{dbmss} for \proglang{R}},
  journal = {Journal of Statistical Software, Code Snippets},
  year = {2015},
  volume = {67},
  number = {3},
  pages = {1--15},
  doi = {10.18637/jss.v067.c03},
}

@Article{MollerEtal2019,
  author = {M{\o}ller, Jesper and Christensen, Heidi S. and Cuevas-Pacheco, Francisco and Christoffersen, Andreas D.},
  title = {Structured Space-Sphere Point Processes and K-Functions},
  journal = {Methodology and Computing in Applied Probability},
  year = {2019},
  doi = {10.1007/s11009-019-09712-w}
}

@article{MollerEtal2016a,
  author = {M{\o}ller, Jesper and Ghorbani, Mohammad and Rubak, Ege},
  title = {Mechanistic Spatio-Temporal Point Process Models for Marked Point Processes, with a View to Forest Stand Data},
  journal = {Biometrics},
  year = {2016},
  volume = {72},
  number = {3},
  pages = {687--696},
  keywords = {Conditional intensity, Independence between points and marks, Likelihood ratio statistic, Maximum likelihood, Model checking, Quantitative marks},
  doi = {10.1111/biom.12466},
}

@article{MollerEtal2016b,
  author = {M{\o}ller, Jesper and Safavinanesh, Farzaneh and Rasmussen, Jakob Gulddahl},
  title = {The Cylindrical $K$-Function and Poisson Line Cluster Point Processes},
  journal = {Biometrika},
  year = {2016},
  volume = {103},
  number = {4},
  pages = {937--954},
  keywords = {Anisotropy; Bayesian inference; Directional K-function; Minicolumn hypothesis; Poisson line
  process; Three-dimensional point pattern analysis},
  doi = {10.1093/biomet/asw044}
}

@article{MollerWaagepetersen2017,
  author = {M{\o}ller, Jesper and Waagepetersen, Rasmus},
  title = {Some Recent Developments in Statistics for Spatial Point Patterns},
  journal = {Annual Review of Statistics and Its Application},
  volume = {4},
  number = {1},
  pages = {317--342},
  year = {2017},
  doi = {10.1146/annurev-statistics-060116-054055},
}

@Article{MrkvickaEtal2017,
  Author = {Mrkvi{\v{c}}ka, Tom{\'a}{\v{s}} and Myllym{\"a}ki, Mari and Hahn, Ute},
  Title = {Multiple Monte Carlo Testing, with Applications in Spatial Point Processes},
  Journal = {Statistics and Computing},
  Year = {2017},
  Number = {5},
  Pages = {1239--1255},
  Volume = {27},
  Doi = {10.1007/s11222-016-9683-9}
}

@Article{MrkvickaEtal2020,
  Author = {Mrkvi\v{c}ka, Tom\'a\v{s} and Myllym{\"a}ki, Mari and J\'ilek, Milan and Hahn, Ute},
  Title = {A One-Way {ANOVA} Test for Functional Data with Graphical Interpretation},
  Journal = {Kybernetika},
  Year = {2020},
  Volume = {56},
  Number = {3},
  Pages = {432--458},
  Doi = {10.14736/kyb-2020-3-0432}
}

@Article{MrkvickaEtal2021a,
  Author = {Mrkvi{\v{c}}ka, Tom{\'a}{\v{s}} and Roskovec, Tom{\'a}{\v{s}} and Rost, Michael},
  Title = {A Nonparametric Graphical Tests of Significance in Functional {GLM}},
  Journal = {Methodology and Computing in Applied Probability},
  Year = {2021},
  Volume = {23},
  Pages = {593--612},
  Doi = {10.1007/s11009-019-09756-y}
}

@Article{MrkvickaEtal2021b,
  Author = {Mrkvi\v{c}ka, T. and Myllym{\"a}ki, M. and Kuronen, M. and Narisetty, N. N.},
  Title = {New Methods for Multiple Testing in Permutation Inference for the General Linear Model},
  Journal = {Statistics in Medicine},
  Year = {2022},
  Volume = {41},
  Number = {2},
  Pages = {276-297},
  Doi = {10.1002/sim.9236}
}

@Article{MrkvickaEtal2016,
  Author = {Mrkvi\v{c}ka, T. and Soubeyrand, S. and Myllym{\"a}ki, M. and Grabarnik, P. and Hahn, U.},
  Title = {{Monte Carlo} Testing in Spatial Statistics, with Applications to Spatial Residuals},
  Journal = {Spatial Statistics},
  Year  = {2016},
  volume = {18},
  pages = {40--53},
  Doi = {10.1016/j.spasta.2016.04.005}
}

@article{Murrell2018,
  author = {Murrell, David J.},
  title = {A Global Envelope Test to Detect Non-Random Bursts of Trait Evolution},
  journal = {Methods in Ecology and Evolution},
  year = {2018},
  volume = {9},
  number = {7},
  pages = {1739--1748},
  keywords = {adaptive radiation, comparative methods, disparity through time, macroevolution, morphological diversification, null model, phenotypic diversification},
  doi = {10.1111/2041-210X.13006},
}

@Article{MyllymakiEtal2015,
  Author = {Myllym{\"a}ki, M. and Grabarnik, P. and Seijo, H. and Stoyan, D.},
  Title = {Deviation Test Construction and Power Comparison for Marked Spatial Point Patterns},
  Journal  = {Spatial Statistics},
  Year  = {2015},
  Pages  = {19--34},
  Volume  = {11},
  Doi = {http://dx.doi.org/10.1016/j.spasta.2014.11.004}
}

@Article{MyllymakiEtal2017,
  Author  = {Myllym{\"a}ki, M. and Mrkvi\v{c}ka, T. and Grabarnik, P. and Seijo, H. and Hahn, U.},
  Title  = {Global Envelope Tests for Spatial Processes},
  Journal = {Journal of the Royal Statistical Society B},
  sjournal = {J. R. Stat. Soc. B},
  Year  = {2017},
  Pages = {381--404},
  Volume = {79},
  Doi = {10.1111/rssb.12172}
}

@Article{NarisettyNair2016,
  Author = {N. N. Narisetty and V. J. Nair},
  Title  = {Extremal Depth for Functional Data and Applications},
  Journal = {Journal of the American Statistical Association},
  Year  = {2016},
  Number = {516},
  Pages  = {1705--1714},
  Volume  = {111},
  doi = {10.1080/01621459.2015.1110033}
}

@InCollection{PollardEtal2005,
  Author = {Pollard, K.S. and Dudoit, S. and van der Laan, M.J.},
  Title  = {Multiple Testing Procedures: The \pkg{multtest} Package and Applications to Genomics},
  Booktitle  = {Bioinformatics and Computational Biology Solutions Using \proglang{R} and Bioconductor. Statistics for Biology and Health},
  Publisher  = {Springer-Verlag},
  Address = {New York},
  Year = {2005},
  Editor = {Gentleman, R. and Carey, V.J. and Huber, W. and Irizarry, R.A. and Dudoit, S.},
  Pages = {249--271}
}

@Manual{R2020,
  author = {\proglang{R} {Core Team}},
  title = {\proglang{R}: A Language and Environment for Statistical Computing},
  organization = {\proglang{R} Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2020},
  url = {https://www.R-project.org/}
}

@article{RafatiEtal2016,
  author = {Rafati, A.H. and Safavimanesh, F. and Dorph-Petersen, K.-A. and Rasmussen, J.G. and M{\o}ller, J. and Nyengaard, J.R.},
  title = {Detection and Spatial Characterization of Minicolumnarity in the Human Cerebral Cortex},
  journal = {Journal of Microscopy},
  year = {2016},
  volume = {261},
  number = {1},
  pages = {115--126},
  keywords = {Cerebral cortex, cylindrical K-function, minicolumns},
  doi = {10.1111/jmi.12321},
}

@article{RajalaEtal2018,
  author = {Rajala, T. and Murrell, D. J. and Olhede, S. C.},
  title = {Detecting Multivariate Interactions in Spatial Point Patterns with Gibbs Models and Variable Selection},
  journal = {Journal of the Royal Statistical Society C},
  year = {2018},
  volume = {67},
  number = {5},
  pages = {1237--1273},
  keywords = {Barro Colorado Island, Gibbs models, Multivariate point patterns, Species interaction, Variable selection},
  doi = {10.1111/rssc.12281},
}

@Book{RamsaySilverman2005,
  Author = {Ramsay, J. O. and Silverman, B. W.},
  Title = {Functional Data Analysis},
  Publisher = {Springer-Verlag},
  Address = {New York},
  Year  = {2005},
  Edition = {2},
  Series = {Springer Series in Statistics},
  ISBN = {978-0387-40080-8},
  Lccn = {0000},
}

@Manual{fda2017,
  author = {Ramsay, J. O. and Wickham, Hadley and Graves, Spencer and Hooker, Giles},
  title = {\pkg{fda}: Functional Data Analysis},
  year = {2017},
  note = {\proglang{R}~package version~2.4.7},
  url = {https://CRAN.R-project.org/package=fda}
}

@article{RetterEtal2019,
  author = {Retter, B and Hatchell, J. and Naylor, Tim},
  title = {Spatial Statistics in Star-Forming Regions: Testing the Limits of Randomness},
  DOI= {10.1093/mnras/stz1279},
  journal = {Monthly Notices of the Royal Astronomical Society},
  year = {2019},
  volume = {487},
  number = {1},
  pages = {887--899}
}

@Article{Ripley1977,
  Author = {Ripley, Brian D.},
  Title = {Modelling Spatial Patterns},
  Journal = {Journal of the Royal Statistical Society B},
  Year = {1977},
  Number = {2},
  Pages = {172--212},
  Volume = {39},
  Abstract = {Spatial point processes may be analysed at two levels. Quadrat and distance methods were designed for the sampling of a population in the field. In this paper we consider those situations in which a map of a spatial pattern has been produced at some cost and we wish to extract the maximum possible information. We review the stochastic models which have been proposed for spatial point patterns and discuss methods by which the fit of such a model can be tested. Certain models are shown to be the equilibrium distributions of spatial-temporal stochastic processes. The theory is illustrated by several case studies.}
}

@Book{Ripley1981,
  Title = {Spatial Statistics},
  Author = {Ripley, B., D.},
  Publisher = {John Wiley \& Sons},
  Year = {1981},
  Series  = {Wiley Series in Probability and Mathematical Statistics},
  ISBN = {978-0-471-08367-2},
  Lccn = {0000},
  Address = {New Jersey}
}

@article{SmejkalEtal2017,
  author = {{\v S}mejkal, Marek and Ricard, Daniel and Vej{\v r}{\'i}k, Luk{\'a}{\v s} and Mrkvi{\v c}ka, Tom{\'a}{\v s} and Vebrov{\'a}, Lucie and Baran, Roman and Blabolil, Petr and  Sajdlov{\'a}, Zuzana and Vej{\v r}{\'i}kov{\'a}, Ivana and Prchalov{\'a} Marie and Kube{\v c}ka, Jan},
  title = {Seasonal and Daily Protandry in a Cyprinid Fish},
  journal = {Scientific Reports},
  year = {2017},
  volume = {7},
  number = {4737},
  pages = {},
  doi = {10.1038/s41598-017-04827-x}
}

@article{Stoyan2016,
  author = {Stoyan, D.},
  title = {Point Process Statistics: Application to Modern and Contemporary Art and Design},
  journal = {Journal of Mathematics and the Arts},
  volume = {10},
  number = {1-4},
  pages = {20--34},
  year  = {2016},
  publisher = {Taylor & Francis},
  doi = {10.1080/17513472.2016.1208980},
}

@Article{SunGenton2011,
  Title = {Functional Boxplots},
  Author = {Sun, Ying and Genton, Marc G.},
  Journal = {Journal of Computational and Graphical Statistics},
  Year = {2011},
  Month = jan,
  Number = {2},
  Pages  = {316--334},
  Volume = {20},
  Doi = {10.1198/jcgs.2011.09224}
}

@article{SunEtal2012,
  author = {Sun, Ying and Genton, Marc G. and Nychka, Douglas W.},
  title = {Exact Fast Computation of Band Depth for Large Functional Datasets: How Quickly Can One Million Curves Be Ranked?},
  journal = {Stat},
  year = {2012},
  volume = {1},
  number = {1},
  pages = {68--74},
  keywords = {approximate solution, band depth, exact solution, functional boxplot, functional data, large dataset, modified band depth},
  doi = {10.1002/sta4.8},
}

@article{VelazquezEtal2016,
  author = {Vel{\'a}zquez, Eduardo and Mart{\'i}nez, Isabel and Getzin, Stephan and Moloney, Kirk A. and Wiegand, Thorsten},
  title = {An Evaluation of the State of Spatial Point Pattern Analysis in Ecology},
  journal = {Ecography},
  year = {2016},
  volume = {39},
  number = {11},
  pages = {1042--1055},
  doi = {10.1111/ecog.01579},
}

@article{WangEtal2018,
  author = {Wang, Xugao and Wiegand, Thorsten and Anderson-Teixeira, Kristina J. and Bourg, Norman A. and Hao, Zhanqing and Howe, Robert and Jin, Guangze and Orwig, David A. and Spasojevic, Marko J. and Wang, Shunzhong and Wolf, Amy and Myers, Jonathan A.},
  title = {Ecological Drivers of Spatial Community Dissimilarity, Species Replacement and Species Nestedness Across Temperate Forests},
  journal = {Global Ecology and Biogeography},
  year = {2018},
  volume = {27},
  number = {5},
  pages = {581--592},
  keywords = {beta diversity, biotic interactions, community assembly, dispersal limitation, habitat filtering, nestedness, pattern reconstruction, point pattern analysis, species replacement},
  doi = {10.1111/geb.12719}
}

@Book{Wickham2016,
  author = {Hadley Wickham},
  title = {\pkg{ggplot2}: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag},
  address = {New York},
  year = {2016},
  isbn = {978-3-319-24277-4}
}

@Article{WiesenfarthEtal2012,
  title = {Direct Simultaneous Inference in Additive Models and Its Application to Model Undernutrition},
  journal = {Journal of the American Statistical Association},
  volume = {107},
  number = {500},
  pages = {1286--1296},
  year = {2012},
  author = {Wiesenfarth, Manuel and Krivobokova, Tatyana and Klasen, Stephan and Sperlich, Stefan},
  doi = {10.1080/01621459.2012.682809}
}

@article{WinklerEtal2014,
  author = {Winkler,Anderson M. and Ridgway, Gerard R. and Webster, Matthew A. and Smith, Stephen M. and Nichols, Thomas E.},
  title = {Permutation Inference for the General Linear Model},
  journal = {NeuroImage},
  volume = {92},
  pages = {381--397},
  year = {2014},
  doi = {10.1016/j.neuroimage.2014.01.060}
}

@article{YlitaloEtal2016,
  author = {Ylitalo, Anna-Kaisa and S{\"a}rkk{\"a}, Aila and Guttorp, Peter},
  doi = {10.1214/16-AOAS921},
  journal = {The Annals of Applied Statistics},
  sjournal = {Ann. Appl. Stat.},
  month = {06},
  number = {2},
  pages = {549--574},
  publisher = {The Institute of Mathematical Statistics},
  title = {What We Look at in Paintings: A Comparison Between Experienced and Inexperienced Art Viewers},
  volume = {10},
  year = {2016}
}

@Manual{depthTools2013,
  title = {\pkg{depthTools}: Depth Tools Package},
  author = {Sara L\'{o}pez-Pintado and Aurora Torrente},
  year = {2013},
  note = {\proglang{R}~package version~0.4},
  url = {https://CRAN.R-project.org/package=depthTools}
}

@article{TorrenteEtal2013,
  author = {Torrente, A. and L\'{o}pez-Pintado, S. and Romo, J.},
  title = {\pkg{DepthTools}: an \proglang{R} Package for a Robust Analysis of Gene Expression Data},
  journal = {BMC Bioinformatics},
  year = {2013},
  volume = {14},
  number = {237},
  doi = {doi:10.1186/1471-2105-14-237}
}

@article{DiMartinoEtal2014,
  author = {Di Martino, A. and Yan, C. and Li, Q. and Denio, E. and Castellanos, F. and Alaerts, K. and Anderson, J. and Assaf, M. and Bookheimer, S. and Dapretto, M. and et al.},
  title = {The Autism Brain Imaging Data Exchange: Towards a Large-Scale Evaluation of the Intrinsic Brain Architecture in Autism},
  journal = {Molecular Psychiatry},
  year = {2014},
  volume = {19},
  pages = {659--667}
}

@article{ZouEtal2008,
  author = {Zou, Q.-H. and Zhu, C.-Z. and Yang, Y. and Zuo, X.-N. and Long, X.-Y. and Cao, Q.-J. and Wang, Y.-F. and Zang, Y.-F.},
  title = {An Improved Approach to Detection of Amplitude of Low-Frequency Fluctuation (ALFF) for Resting-State fMRI: Fractional ALFF},
  journal = {Journal of Neuroscience Methods},
  year = {2008},
  volume = {172},
  pages = {137--141}
}

@article{Tzourio-MazoyerEtal2002,
  author = {Tzourio-Mazoyer, N. and Landeau, B. and Papathanassiou, D. and Crivello, F. and Etard, O. and Delcroix, N. and Mazoyer, B. and Joliot, M.},
  title = {Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain},
  journal = {NeuroImage},
  year = {2002},
  volume = {15},
  pages = {273--289}
}

@article{AndersonRobinson2001,
  author = {Anderson, Marti J. and Robinson, John},
  title = {Permutation Tests for Linear Models},
  journal = {Australian \& New Zealand Journal of Statistics},
  year = {2001},
  volume = {43},
  number = {1},
  pages = {75--88},
  doi = {10.1111/1467-842X.00156},
  keywords = {asymptotics, partial correlations, power, resampling.},
  abstract = {Several approximate permutation tests have been proposed for tests of partial regression coefficients in a linear model based on sample partial correlations. This paper begins with an explanation and notation for an exact test. It then compares the distributions of the test statistics under the various permutation methods proposed, and shows that the partial correlations under permutation are asymptotically jointly normal with means 0 and variances 1. The method of Freedman \& Lane (1983) is found to have asymptotic correlation 1 with the exact test, and the other methods are found to have smaller correlations with this test. Under local alternatives the critical values of all the approximate permutation tests converge to the same constant, so they all have the same asymptotic power. Simulations demonstrate these theoretical results.}
}

@article{AndersonTerBraak2003,
  author = {Anderson, Marti and Ter Braak, Cajo},
  title = {Permutation Tests for Multi-Factorial Analysis of Variance},
  journal = {Journal of Statistical Computation and Simulation},
  year  = {2003},
  volume = {73},
  number = {2},
  pages = {85--113},
  publisher = {Taylor \& Francis},
  doi = {10.1080/00949650215733}
}

@article{MyllymakiEtal2020,
  author = {Myllym{\"a}ki, Mari and Kuronen, Mikko and Mrkvi\v{c}ka, Tom\'a\v{s}},
  title = {Testing Global and Local Dependence of Point Patterns on Covariates in Parametric Models},
  journal = {Spatial Statistics},
  year = {2020},
  volume = {42},
  pages = {100436},
  issn = {2211-6753},
  doi = {https://doi.org/10.1016/j.spasta.2020.100436}
}

@article{PollingtonEtal2020,
  author = {Pollington, Timothy M. and Tildesley, Michael J. and Hollingsworth, T. D{\'e}irdre and Chapman, Lloyd A.C.},
  title = {Developments in Statistical Inference When Assessing Spatiotemporal Disease Clustering with the Tau Statistic},
  journal = {Spatial Statistics},
  pages = {100438},
  year = {2020},
  issn = {2211-6753},
  doi = {https://doi.org/10.1016/j.spasta.2020.100438}
}

@Article{MyllymakiMrkvicka2020,
  Author = {Myllym{\"a}ki, Mari and Mrkvi\v{c}ka, Tom\'a\v{s}},
  Title = {\pkg{GET}: Global Envelopes in \proglang{R}},
  Journal = {{\rm arXiv:1911.06583 [stat.ME]}},
  Year = {2020},
  Url = {https://arxiv.org/abs/1906.09004}
}

@Article{MyllymakiMrkvicka2020b,
  Author = {Myllym{\"a}ki, Mari and Mrkvi\v{c}ka, Tom\'a\v{s}},
  Title = {Comparison of Non-parametric Global Envelopes},
  Journal = {{\rm arXiv:2008.09650 [stat.ME]}},
  Year = {2020},
  Url = {https://arxiv.org/abs/2008.09650}
}

@Manual{patchwork2020,
  title = {\pkg{patchwork}: The Composer of Plots},
  author = {Thomas Lin Pedersen},
  year = {2020},
  note = {\proglang{R} package version 1.1.0},
  url = {https://CRAN.R-project.org/package=patchwork},
}
