Visualize Clade Recovery and Support Across Phylogenetic Trees

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Documentation for package ‘phylorug’ version 0.1.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

add_tree	Add a comparison tree to an existing node presence matrix
check_taxa	Diagnose taxon consistency between backbone and comparison trees
node_presence_matrix	Tabulate clade recovery and support across trees
plot_phylorug	Draw a phylorug: a backbone tree with rug plots on every internal node
prune_to_shared	Trim the backbone and its comparison trees to their shared set of taxa
read_trees	Import phylogenetic trees from a directory
sample_trees	Sample beetle phylogenies (15-taxon subset)
translate_tips	Relabel tips across a list of trees using a lookup table