* using log directory 'd:/Rcompile/CRANpkg/local/4.7/simr.Rcheck'
* using R Under development (unstable) (2026-07-21 r90286 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-07-22 15:11:26 UTC
* checking for file 'simr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'simr' version '1.0.9'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'simr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s] OK
* checking whether the package can be unloaded cleanly ... [3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s] OK
* checking loading without being on the library search path ... [3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s] NOTE
Found calls to structure() using deprecated special names:
  simr/tests/testthat/test_powerSim.R (.Dim: 1, .Dimnames: 1)
'.Dim' should be changed to 'dim'.
'.Dimnames' should be changed to 'dimnames'.
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [8s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [27s] ERROR
  Running 'test-all.R' [26s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > if(require(testthat)) {
  + 
  +     test_check("simr")
  + }
  Loading required package: testthat
  Loading required package: simr
  Loading required package: lme4
  Loading required package: Matrix
  
  Attaching package: 'simr'
  
  The following object is masked from 'package:lme4':
  
      getData
  
  The following object is masked from 'package:testthat':
  
      compare
  
  Saving _problems/test_new-39.R
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 115 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_new.R:39:5'): makeGlmer works ──────────────────────────────────
  Error in `mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc)`: unexpected parameter vector length: length(pars)=3, npar=3, nAGQ=1; (expected length(pars)==npar iff nAGQ==0)
  Backtrace:
      ▆
   1. └─simr::makeGlmer(...) at test_new.R:39:5
   2.   └─simr:::makeMer(formula, family, fixef, VarCorr, , data, deparse(substitute(data)))
   3.     ├─base::suppressWarnings(...)
   4.     │ └─base::withCallingHandlers(...)
   5.     └─lme4::glmer(formula, family = family, data = data, control = glmerSet(theta))
   6.       └─lme4::mkMerMod(...)
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 115 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [25s] ERROR
Error(s) in re-building vignettes:
--- re-building 'examples.Rmd' using rmarkdown
--- finished re-building 'examples.Rmd'

--- re-building 'fromscratch.Rmd' using rmarkdown

Quitting from fromscratch.Rmd:44-49 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `mkMerMod()`:
! unexpected parameter vector length: length(pars)=3, npar=3, nAGQ=1; (expected length(pars)==npar iff nAGQ==0)
---
Backtrace:
    ▆
 1. └─simr::makeGlmer(...)
 2.   └─simr:::makeMer(formula, family, fixef, VarCorr, , data, deparse(substitute(data)))
 3.     ├─base::suppressWarnings(...)
 4.     │ └─base::withCallingHandlers(...)
 5.     └─lme4::glmer(formula, family = family, data = data, control = glmerSet(theta))
 6.       └─lme4::mkMerMod(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'fromscratch.Rmd' failed with diagnostics:
unexpected parameter vector length: length(pars)=3, npar=3, nAGQ=1; (expected length(pars)==npar iff nAGQ==0)
--- failed re-building 'fromscratch.Rmd'

SUMMARY: processing the following file failed:
  'fromscratch.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [19s] OK
* checking HTML version of manual ... [1s] OK
* DONE
Status: 2 ERRORs, 1 NOTE