Package: causalBatch
Type: Package
Title: Causal Batch Effects
Version: 1.3.0
Date: 2025-01-07
Authors@R: 
  c(person(given="Eric W.", family="Bridgeford", role=c("aut", "cre"),
    email="ericwb95@gmail.com"),
    person(given="Michael", family="Powell", role="ctb"),
    person(given="Brian", family="Caffo", role="ctb"),
    person(given="Joshua T.", family="Vogelstein", role="ctb")
  )
Maintainer: Eric W. Bridgeford <ericwb95@gmail.com>
Description: Software which provides numerous functionalities for detecting and removing group-level effects from high-dimensional scientific data which, when combined with additional assumptions, allow for causal conclusions, as-described in our manuscripts Bridgeford et al. (2024) <doi:10.1101/2021.09.03.458920> and Bridgeford et al. (2023) <doi:10.48550/arXiv.2307.13868>. Also provides a number of useful utilities for generating simulations and balancing covariates across multiple groups/batches of data via matching and propensity trimming for more than two groups.
Depends: R (>= 4.2.0)
biocViews:
Imports: cdcsis, sva, MatchIt, nnet, dplyr, magrittr, genefilter,
        BiocParallel, utils
URL: https://github.com/neurodata/causal_batch
Encoding: UTF-8
VignetteBuilder: knitr
Suggests: tidyr, ggpubr, knitr, rmarkdown, parallel, testthat (>=
        3.0.0), covr, roxygen2, ks, ggplot2
License: GPL-3
RoxygenNote: 7.3.0
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2025-01-07 12:22:47 UTC; eric
Author: Eric W. Bridgeford [aut, cre],
  Michael Powell [ctb],
  Brian Caffo [ctb],
  Joshua T. Vogelstein [ctb]
Repository: CRAN
Date/Publication: 2025-01-07 12:50:07 UTC
Built: R 4.7.0; ; 2026-07-22 03:35:08 UTC; windows
