A Logistic Regression Model for Testing Microbial Differential Abundance

---

Documentation for package ‘LOCOM2’ version 1.1

• DESCRIPTION file
• Package README

Help Pages

com2seq	com2seq: combining two sequencing datasets (e.g., from 16S marker-gene and shotgun metagenomic sequencing) for integrative analysis of differential abundance at both the genus and community levels
locom2	A logistic regression model for testing differential abundance in compositional microbiome data (LOCOM2)
meta.1	Metadata for samples in otu.table.1
meta.2	Metadata for samples in otu.table.2
otu.table.1	Simulated OTU count table
otu.table.2	Simulated OTU count table
throat.meta.filter	Metadata of the throat microbiome samples
throat.otu.table.filter	OTU count table from 16S sequencing of the throat microbiome samples
throat.otu.taxonomy	Taxonomy names for OTUs from 16S sequencing of the throat microbiome samples