| autoplot.bundle | Plots a cross section of a cylinder bundle using *ggplot2* | 
| CallaghanCompartment | Callaghan's model for restricted diffusion in a cylinder | 
| CylinderBundleCompartment | Cylinder bundle compartment class | 
| CylinderCompartment | Cylinder compartment class | 
| CylinderRadialCompartment | Cylinder radial compartment class | 
| NeumanCompartment | Neuman's model for restricted diffusion in a cylinder | 
| plot.bundle | Plots a cross section of a cylinder bundle | 
| plot3d | Plots a 3D representation of a cylinder bundle using *plotly* | 
| run_app | Runs the MIDI Shiny web application | 
| simulate_bundle | Generates a cross section of a cylinder bundle | 
| SodermanCompartment | Soderman's model for restricted diffusion in a cylinder | 
| StaniszCompartment | Stanisz's model for restricted diffusion in a cylinder | 
| VanGelderenCompartment | Van Gelderen's model for restricted diffusion in a cylinder |