AlphaSimR-package	AlphaSimR-package
.newPop	dot-newPop
aa	aa
addError	addError
addSegSite	addSegSite
AlphaSimR	AlphaSimR-package
asCategorical	asCategorical
attrition	attrition
bv	bv
c,HybridPop-method	HybridPop-class
c,MapPop-method	MapPop-class
c,MultiPop-method	MultiPop-class
c,NamedMapPop-method	NamedMapPop-class
c,Pop-method	Pop-class
c,RawPop-method	RawPop-class
calcGCA	calcGCA
calcPheno	calcPheno
cChr	cChr
checkSexes	checkSexes
convertTraitsToNames	convertTraitsToNames
dd	dd
doubleGenome	doubleGenome
ebv	ebv
editGenome	editGenome
editGenomeTopQtl	editGenomeTopQtl
fastRRBLUP	fastRRBLUP
findLociMapSuperset	findLociMapSuperset
findQtlIndex	findQtlIndex
genicVarA	genicVarA
genicVarAA	genicVarAA
genicVarD	genicVarD
genicVarG	genicVarG
genParam	genParam
getCandidates	getCandidates
getFam	getFam
getGenMap	getGenMap
getLociNames	getLociNames
getNumThreads	getNumThreads
getPed	getPed
getQtlMap	getQtlMap
getResponse	getResponse
getSnpMap	getSnpMap
gv	gv
hybridCross	hybridCross
HybridPop-class	HybridPop-class
importGenMap	importGenMap
importHaplo	importHaplo
importInbredGeno	importInbredGeno
isFemale	isFemale
isHybridPop	HybridPop-class
isMale	isFemale
isMapPop	MapPop-class
isMultiPop	MultiPop-class
isNamedMapPop	NamedMapPop-class
isPop	isPop
isRawPop	RawPop-class
length,MultiPop-method	MultiPop-class
length,Pop-method	Pop-class
LociMap-class	LociMap-class
makeCross	makeCross
makeCross2	makeCross2
makeDH	makeDH
mapLoci	mapLoci
MapPop-class	MapPop-class
meanEBV	meanEBV
meanG	meanG
meanP	meanP
mergeGenome	mergeGenome
mergePops	mergePops
MultiPop-class	MultiPop-class
mutate	mutate
NamedMapPop-class	NamedMapPop-class
newEmptyPop	newEmptyPop
newMapPop	newMapPop
newMultiPop	newMultiPop
newPop	newPop
nInd	nInd
pedigreeCross	pedigreeCross
pheno	pheno
Pop-class	Pop-class
popVar	popVar
pullIbdHaplo	pullIbdHaplo
pullMarkerGeno	pullMarkerGeno
pullMarkerHaplo	pullMarkerHaplo
pullQtlGeno	pullQtlGeno
pullQtlHaplo	pullQtlHaplo
pullSegSiteGeno	pullSegSiteGeno
pullSegSiteHaplo	pullSegSiteHaplo
pullSnpGeno	pullSnpGeno
pullSnpHaplo	pullSnpHaplo
quickHaplo	quickHaplo
randCross	randCross
randCross2	randCross2
RawPop-class	RawPop-class
reduceGenome	reduceGenome
resetPop	resetPop
rnormWithSeed	rnormWithSeed
RRBLUP	RRBLUP
RRBLUP2	RRBLUP2
RRBLUPMemUse	RRBLUPMemUse
RRBLUP_D	RRBLUP_D
RRBLUP_D2	RRBLUP_D2
RRBLUP_GCA	RRBLUP_GCA
RRBLUP_GCA2	RRBLUP_GCA2
RRBLUP_SCA	RRBLUP_SCA
RRBLUP_SCA2	RRBLUP_SCA2
RRsol-class	RRsol-class
runMacs	runMacs
runMacs2	runMacs2
sampAddEff	sampAddEff
sampDomEff	sampDomEff
sampEpiEff	sampEpiEff
sampleHaplo	sampleHaplo
selectCross	selectCross
selectFam	selectFam
selectInd	selectInd
selectLoci	selectLoci
selectOP	selectOP
selectWithinFam	selectWithinFam
self	self
selIndex	selIndex
selInt	selInt
setEBV	setEBV
setMarkerHaplo	setMarkerHaplo
setPheno	setPheno
setPhenoGCA	setPhenoGCA
setPhenoProgTest	setPhenoProgTest
show,Pop-method	Pop-class
show,RawPop-method	RawPop-class
SimParam	SimParam
smithHazel	smithHazel
solveMKM	solveMKM
solveMVM	solveMVM
solveRRBLUP	solveRRBLUP
solveRRBLUPMK	solveRRBLUPMK
solveRRBLUPMV	solveRRBLUPMV
solveRRBLUP_EM	solveRRBLUP_EM
solveRRBLUP_EM2	solveRRBLUP_EM2
solveRRBLUP_EM3	solveRRBLUP_EM3
solveUVM	solveUVM
TraitA-class	TraitA-class
TraitA2-class	TraitA2-class
TraitA2D-class	TraitA2D-class
TraitAD-class	TraitAD-class
TraitADE-class	TraitADE-class
TraitADEG-class	TraitADEG-class
TraitADG-class	TraitADG-class
TraitAE-class	TraitAE-class
TraitAEG-class	TraitAEG-class
TraitAG-class	TraitAG-class
transMat	transMat
usefulness	usefulness
varA	varA
varAA	varAA
varD	varD
varEBV	varEBV
varG	varG
varP	varP
writePlink	writePlink
writeRecords	writeRecords
[,HybridPop-method	HybridPop-class
[,MapPop-method	MapPop-class
[,MultiPop-method	MultiPop-class
[,NamedMapPop-method	NamedMapPop-class
[,Pop-method	Pop-class
[,RawPop-method	RawPop-class
[[,MultiPop-method	MultiPop-class
