# Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets

## Documentation for package ‘SCIntRuler’ version 0.99.6

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

SCIntRuler-package | SCIntRuler: Integration of Single-Cell RNA-seq Datasets
CalcuSCIR | Calculate SCIntRuler
crossdist | Cross-Distance Matrix Calculation
FindCell | Find cells indicating shared biological features across conditions
FindNNDist | Find the nearest neighbors
FindNNDistC | Find the nearest neighbors
GetCluster | Get broad and fine clusters
NormData | Normalized RNA data matrix
PermTest | Permutation Test
PlotSCIR | Plot SCIntRuler
SCEtoSeurat | Input and Split SingleCellExperiment Data
SCIntRuler | SCIntRuler: Integration of Single-Cell RNA-seq Datasets
sim_data_sce | My Example Dataset
sim_result | My Example Dataset
SummCluster | Get maximum number of broad clusters