export("dataProcessing", "batchdataProcessing", "setmsbatch", "alignmsbatch", 
       "groupmsbatch", "fillpeaksmsbatch")
export("idNEG", "idPOS", "idBAneg", "idCarpos", "idCEpos", "idCerneg", "idCerpos", 
       "idDGpos", "idFAHFAneg", "idFAneg", "idLPCpos", "idLPCneg", "idLPEneg", 
       "idLPEpos", "idLPGneg", "idLPIneg", "idLPSneg", "idMGpos", "idPCpos", 
       "idPCneg", "idPEneg", "idPEpos", "idPGneg", "idPGpos", "idPIneg", 
       "idPSneg", "idSMpos", "idSMneg", "idSphpos", "idSphneg", "idSphPneg", 
       "idSphPpos", "idTGpos", "idCLneg", "idPConeg", "idPCpneg", "idPEoneg", 
       "idPEpneg", "idCerPneg", "idPCopos", "idPCppos", "idPEopos", "idPEppos", 
       "idCerPpos", "idAcylCerneg", "idAcylCerpos", "annotatemsbatch")
export("LipidMSapp", "plotLipids", "plotticmsbatch", "ploteicmsbatch", 
       "rtdevplot", "searchIsotopes", "searchIsotopesmsbatch")
export("assignDB", "chainFrags", "checkClass", "checkIntensityRules", 
       "coelutingFrags", "ddaFrags", "combineChains", "createLipidDB", 
       "assignDB", "crossTables", "findCandidates", "getInclusionList", 
       "organizeResults")

import("utils", "parallel", "doParallel", "foreach", "shiny")
importFrom("iterators", "iter")
importFrom("CHNOSZ", "makeup")
importFrom("stats", "cor", "predict", "smooth.spline", "loess", "median", "smooth")
importFrom("graphics", "axis", "legend", "lines", "par")
importFrom("readMzXmlData", "readMzXmlFile")
importFrom("scales", "alpha")
importFrom("shinythemes", "shinytheme")
importFrom("grDevices", "dev.control", "dev.off", "pdf", "recordPlot", 
           "colorRampPalette", "colors")

useDynLib("LipidMS")
