Package: shaman
Type: Package
Title: Sampling Hi-C Contact Matrices for Aparametric Normalization
Version: 2.1.0
Authors@R: c(person("Amos", "Tanay", role=c("aut")),
    person("Netta", "Mendelson Cohen", email="netta.mendelsoncohen@weizmann.ac.il",
    role=c("aut")),
    person("Aviezer", "Lifshitz", email="aviezer.lifshitz@weizmann.ac.il",
    role=c("aut", "cre")),
    person("Weizmann Institute of Science", role="cph"))
Description: Generate expected Hi-C (genome-wide chromosome conformation
  capture) data maintaining marginal coverage, and the decay in contact probability
  with increasing genomic distance. Expected Hi-C data is used for normalization
  and graphical presentation of statistical significance of observed Hi-C contact
  enrichments. The method is described in Mendelson Cohen et al. (2017)
  <doi:10.1101/187203>.
License: GPL
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
LinkingTo: Rcpp
SystemRequirements: C++17
Suggests: knitr, testthat, rmarkdown, Gviz, foreach
VignetteBuilder: rmarkdown, knitr
Depends: R (>= 4.0.0)
Imports: misha (>= 3.5.6), Rcpp (>= 0.12.11), RANN, data.table, ggplot2
        (>= 3.4.0), reshape2, grid, plyr, parallel
URL: https://tanaylab.github.io/shaman/,
        https://github.com/tanaylab/shaman
OS_type: unix
BugReports: https://github.com/tanaylab/shaman/issues
NeedsCompilation: yes
Packaged: 2026-10-06 11:10:47 UTC; aviezerl
Author: Amos Tanay [aut],
  Netta Mendelson Cohen [aut],
  Aviezer Lifshitz [aut, cre],
  Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Repository: CRAN
Date/Publication: 2026-10-16 09:50:02 UTC
Built: R 4.6.1; aarch64-apple-darwin23; 2026-10-16 13:26:44 UTC; unix
Archs: shaman.so.dSYM
