# Exploration and Visualisation of Skeletal Transcriptomics Data

## Documentation for package ‘SkeletalVis’ version 0.1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

browse_skeletalvis | Browse the skeletalvis database metadata
experiment_similarity | Get cosine similarity for a query dataset against the skeletalvis database
get_comparisons | Retrieve metadata for the SkeletalVis database
get_experiment | Get the gene differential expression results for an experiment of interest
get_exp_table | Retrieve the experiment table for the SkeletalVis database
get_gene_fold_changes | Get gene differential expression results for genes of interest
load_skeletalvis | Load SkeletalVis data
plot_similarity | Plot ranked cosine similarity scores with top n labels
query | Example gene expression dataset
search_skeletalvis | Search for experiments in SkeletalVis
view_curated_oagenes | View curated osteoarthritis associated genes
view_network | View the OATarget gene network
view_prioritised_oagenes | View prioritised osteoarthritis associated genes
volcano_plot | Volcano Plot of Gene Expression Data