# Visualizing Topological Loops and Voids

## Documentation for package ‘RPointCloud’ version 0.9.1

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

AML10.node287 | CyTOF Data
AML10.node287.rips | CyTOF Data
angleMeans | The 'LoopCircos' Class
Arip | CyTOF Data
clinical | Chronic Lymphocytic Leukemia Clinical Data
CLL-data | Chronic Lymphocytic Leukemia Clinical Data
cutoff | The 'EBexpo' Class
Cycle | 'Cycle' Objects For Visualizing Topological Data Analysis Results
Cycle-class | 'Cycle' Objects For Visualizing Topological Data Analysis Results
cycleSupport | 'Cycle' Objects For Visualizing Topological Data Analysis Results
cytof-data | CyTOF Data
daisydist | Chronic Lymphocytic Leukemia Clinical Data
disentangle | Disentangling Rips Diagrams From Their Initial Data Coordinates
EBexpo | The 'EBexpo' Class
EBexpo-class | The 'EBexpo' Class
ExpoFit | The 'ExpoFit' Class
ExpoFit-class | The 'ExpoFit' Class
Feature | 'Feature' Objects For Visualizing Topological Data Anal;ysis Results
Feature-class | 'Feature' Objects For Visualizing Topological Data Anal;ysis Results
getCycle | 'Cycle' Objects For Visualizing Topological Data Analysis Results
hist-method | The 'EBexpo' Class
image-method | The 'LoopCircos' Class
image-method | 'Projection' Objects For Visualizing 3D Topological Data Analysis Results in 2D
image-method | 'LoopFeature' Objects For Visualizing Features That Define Loops
LDPC | Local Dimension of Point Clouds
lines-method | 'Cycle' Objects For Visualizing Topological Data Analysis Results
LoopCircos | The 'LoopCircos' Class
LoopCircos-class | The 'LoopCircos' Class
LoopFeature | 'LoopFeature' Objects For Visualizing Features That Define Loops
LoopFeature-class | 'LoopFeature' Objects For Visualizing Features That Define Loops
plot-method | 'Cycle' Objects For Visualizing Topological Data Analysis Results
plot-method | 'Feature' Objects For Visualizing Topological Data Anal;ysis Results
plot-method | The 'ExpoFit' Class
plot-method | The 'EBexpo' Class
plot-method | 'Projection' Objects For Visualizing 3D Topological Data Analysis Results in 2D
plot-method | 'LoopFeature' Objects For Visualizing Features That Define Loops
points-method | 'Feature' Objects For Visualizing Topological Data Anal;ysis Results
Projection | 'Projection' Objects For Visualizing 3D Topological Data Analysis Results in 2D
Projection-class | 'Projection' Objects For Visualizing 3D Topological Data Analysis Results in 2D
rip | Single Cell Data on T Regulatory (Treg) Cells
ripdiag | Chronic Lymphocytic Leukemia Clinical Data
tailHisto | Function to extract the right tail of a histogram for display purposes.
takens | Local Dimension of Point Clouds
tmat | Single Cell Data on T Regulatory (Treg) Cells
treg | Single Cell Data on T Regulatory (Treg) Cells
treg-data | Single Cell Data on T Regulatory (Treg) Cells
voidFeature | 3D Scatter Plots of Cycles and Features
voidPlot | 3D Scatter Plots of Cycles and Features
voids | 3D Scatter Plots of Cycles and Features