analysis.averageCorrelation	predefinedAnalyses
analysis.averageTStatistic	predefinedAnalyses
analysis.customOverrepresentation	predefinedAnalyses
analysis.globalAncova	predefinedAnalyses
analysis.globalTest	predefinedAnalyses
analysis.gsea	predefinedAnalyses
analysis.overrepresentation	predefinedAnalyses
countdata	countdata
createSummaryTable	createSummaryTable
evaluateGeneSetUncertainty	evaluateGeneSetUncertainty
filterGeneSets	filterGenesets
geneSetAnalysis	geneSetAnalysis
GiANT	GiANT-package
global	globalAnalysis
global.ancova	globalAnalysis
global.overrepresentation	globalAnalysis
global.test	globalAnalysis
gls	gls
gls.cor	gls
gls.foldChange	gls
gls.moderateTStatistic	gls
gls.nBinomTest	gls
gls.regression	gls
gls.tStatistic	gls
gsAnalysis	gsAnalysis
gss	gss
gss.enrichmentScore	gss
gss.fisherExactTest	gss
gss.gsz	gss
gss.maxmean	gss
gss.mean	gss
gss.median	gss
gss.sum	gss
gss.wilcoxonRankTest	gss
hist.gsaResult	hist
labels	labels
mergeProbesForGenes	mergeProbesForGenes
parseGmt	parseGmt
pathways	pathways
plot.uncertaintyResult	plot
plotOverrepresentation	plotOverrepresentation
predefinedAnalyses	predefinedAnalyses
preprocessGeneSets	preprocessGeneSets
preprocessGs	preprocessGeneSets
significance	significance
significance.permutation	significance
significance.restandardization	significance
significance.sampling	significance
summary.gsaResult	summary
transformation	transformation
transformation.abs	transformation
transformation.adjust	transformation
transformation.adjustAndBinarize	transformation
transformation.binarize	transformation
transformation.localFdr	transformation
transformation.rank	transformation
transformation.square	transformation
