# Geometric Morphometric Methods and Virtual Anthropology Tools

## Documentation for package ‘Arothron’ version 2.0.5

- DESCRIPTION file
- Package README

## Help Pages

Arothron-package | eometric Morphometric Methods and Virtual Anthropology Tools
Altapic | example dataset
aro.clo.points | aro.clo.points
Arothron | eometric Morphometric Methods and Virtual Anthropology Tools
arraytolist | arraytolist
bary.mesh | bary.mesh
compare_check.set | compare_check.set
CScorreffect | CScorreffect Plot showing the correlation in the shape space between original and combined dataset omitting or including the normalization factors calculated with Arothron and MLECScorrection
dec.curve | dec.curve
DM_base_sur | example dataset
DM_face_sur | example dataset
DM_set | example dataset
dta | dta
endomaker | endomaker
endomaker_dir | endomaker_dir
endo_set | example dataset
export_amira | export_amira
export_amira.path | export_amira.path
ext.int.mesh | ext.int.mesh
ext.mesh.rai | ext.mesh.rai
femsets | example dataset
grid_pov | grid_pov
human_skull | example dataset
image2palettes | image2palettes
krd1_tooth | example dataset
landmark_frm2amira | landmark_frm2amira
listtoarray | listtoarray convert a list into an array
localmeshdiff | localmeshdiff Calculate and Visualize local differences between two meshes
Lset2D_list | example dataset
Lset3D_array | example dataset
malleus_bone | example dataset
MAs_sets | example dataset
MLECScorrection | MLECScorrection Maximum Likelihood Estimation of the normalization factor to be applied to optimize the correlation between two landmark configurations to be combined by using twodviews and
noise.mesh | noise.mesh
out.inn.mesh | out.inn.mesh
patches_frm2amira | patches_frm2amira
PCscoresCorr | PCscoresCorr Perform a correlation test between two matrices of PCscores
permutangle | permutangle
pov_selecter | pov_selecter
primendoR | example dataset
read.amira.dir | read.amira.dir
read.amira.set | read.amira.set
read.path.amira | read.path.amira
repmat | repmat
RMs_sets | example dataset
SCP1.mesh | example dataset
sinus_set | example dataset
SM_set | example dataset
spherical.flipping | spherical.flipping
trasf.mesh | trasf.mesh
twodvarshape | twodvarshape Calculates the shape variation associated to a value of PC scores associated to a specific combined landmark configuration or view
twodviews | twodviews Combine and calculate the PCscores matrix from a list of different landmark configurations to be combined
volendo | volendo
yoda_set | example dataset
yoda_sur | example dataset