# Tandem Repeat Analysis by Capillary Electrophoresis

## Documentation for package ‘trace’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

calculate_instability_metrics | Calculate Repeat Instability Metrics
cell_line_fsa_list | A list of fsa files
example_data | example_data
example_data_repeat_table | example_data_repeat_table
extract_alleles | Extract Modal Peaks
extract_fragments | Extract All Fragments
extract_ladder_summary | Extract ladder summary
extract_repeat_correction_summary | Extract repeat correction summary
extract_trace_table | Extract traces
fix_ladders_interactive | Fix ladders interactively
fragments | fragments object
genemapper_table_to_fragments | Convert Genemapper Peak Table to fragments class
load_config | Load Trace Config File
metadata | metadata
plot_batch_correction_samples | Plot correction samples
plot_data_channels | plot_data_channels
plot_fragments | Plot Peak Data
plot_ladders | Plot ladder
plot_repeat_correction_model | Plot Repeat Correction Model
plot_traces | Plot sample traces
read_fsa | Read fsa file
remove_fragments | Remove Samples from List
repeat_table_to_fragments | Convert Repeat Table to Repeats Fragments
size_table_to_fragments | Convert Size Table to Fragments
trace | Main function for sample processing