# An Implementation of Ordinal Pattern Analysis

## Documentation for package ‘opa’ version 0.8.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

bees | Bee data
compare_conditions | Calculates PCCs and c-values based on pairwise comparison of conditions.
compare_groups | Calculate the c-value of the difference in PCCs produced by two groups
compare_hypotheses | Calculate the c-value of the difference in PCCs produced by two hypotheses
correct_pairs | Return the number of pairs of observations matched by the hypothesis
cval_plot | Plot individual chance values
group_cvals | Return the group chance values of the specified model
group_pccs | Return the group PCCs of the specified model
group_results | Group-level PCC and chance values.
hypothesis | Create a hypothesis object
incorrect_pairs | Return the number of pairs of observations not matched by the hypothesis
individual_cvals | Return the individual chance values of the specified model
individual_pccs | Return the individual PCCs of the specified model
individual_results | Individual-level PCC and chance values.
opa | Fit an ordinal pattern analysis model
pcc_plot | Plot individual PCCs.
pituitary | Childhood growth data
plot.opafit | Plots individual-level PCCs and chance-values.
plot.opaGroupComparison | Plot group comparison PCC replicates.
plot.opahypothesis | Plot a hypothesis.
plot.opaHypothesisComparison | Plot hypothesis comparison PCC replicates.
plot.oparandpccs | Plot PCC replicates.
print.opafit | Displays the call used to fit an ordinal pattern analysis model.
print.opaGroupComparison | Prints a summary of results from hypothesis comparison.
print.opahypothesis | Print details of a hypothesis
print.opaHypothesisComparison | Prints a summary of results from hypothesis comparison.
print.pairwiseopafit | Displays the results of a pairwise ordinal pattern analysis.
random_pccs | Return the random order generated PCCs used to calculate the group chance value
summary.opafit | Prints a summary of results from a fitted ordinal pattern analysis model.
summary.opaGroupComparison | Prints a summary of results from hypothesis comparison.
summary.opaHypothesisComparison | Prints a summary of results from hypothesis comparison.