augment_linelist	augment_linelist
entropy	entropy
filter_chain	filter_chain
get_accuracy	get_accuracy
get_consensus	get_consensus
get_entropy	get_entropy
get_Ri	get_Ri
get_si	get_si
get_trees	get_trees
identify	identify
is_linelist	is_linelist
is_outbreaker_chains	is_outbreaker_chains
linelist	linelist
out	out
sample.outbreaker_chains	sample.outbreaker_chains
ttable	ttable
