Package: linf
Type: Package
Title: L-Infinity Normalization and Dominant Community State Types
Version: 0.4.0
Authors@R: 
    person("Pawel", "Gajer", , "pgajer@gmail.com", role = c("aut", "cre"))
Author: Pawel Gajer [aut, cre]
Maintainer: Pawel Gajer <pgajer@gmail.com>
Description: Implements L-infinity normalization for compositional matrices,
    assigns samples to dominant features, constructs truncated and
    hierarchically refined dominant community state types, constructs unordered
    dominance sets with support-based sample filtering, and computes
    representative landmark profiles. The methods are described by Gajer and
    Ravel (2025) <doi:10.48550/arXiv.2503.21543>. Bundled vaginal
    and gut microbiome data support reproducible demonstrations of the package
    interface; phenotype fields in the stratified gut subset are illustrative
    and are not suitable for population-level inference.
License: MIT + file LICENSE
Encoding: UTF-8
Language: en-US
LazyData: true
Depends: R (>= 4.0)
Imports: Matrix, methods
Suggests: testthat (>= 3.2.0), htmltools, knitr, plotly, rmarkdown
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://pgajer.github.io/linf/, https://github.com/pgajer/linf,
        https://arxiv.org/abs/2503.21543
BugReports: https://github.com/pgajer/linf/issues
Config/roxygen2/version: 8.0.0
RoxygenNote: 7.3.3
Config/Needs/website: pgajer/ivue, rgl
NeedsCompilation: no
Packaged: 2026-11-06 17:48:32 UTC; pgajer
Repository: CRAN
Date/Publication: 2026-11-07 19:10:02 UTC
Built: R 4.6.1; ; 2026-11-08 08:59:54 UTC; unix
