# Read and Analyze 'MetIDQ&trade;' Software Output Files

## Documentation for package ‘MetAlyzer’ version 1.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

aggregatedData | Get Aggregated Data
calculate_anova | One-way ANOVA
calculate_cv | Add mean, SD and CV
calculate_log2FC | Calculate log2 fold change
example_extraction_data | Get example extraction data
example_meta_data | Get example meta data
example_mutation_data_xl | Get example mutation data
exportConcValues | Export filtered raw data as csv
filterMetabolites | Filter metabolites
filterMetaData | Filter meta data
log2FC | Get log2FC Data
metalyzer_colors | Get MetAlyzer colors
MetAlyzer_dataset | Open file and read data
pathway | Get pathway file path
plotly_network | Plotly Log2FC Network Plot
plotly_scatter | Plotly Log2FC Scatter Plot
plotly_vulcano | Plotly Log2FC Vulcano Plot
plot_log2FC | Plot log2 fold change
plot_network | Plot Pathway Network
polarity | Get polarity file path
read_named_region | Read Named Regions
renameMetaData | Rename meta data
summarizeConcValues | Summarize concentration values
summarizeQuantData | Summarize quantification status
updateMetaData | Update meta data