DAISIEprep-package	DAISIEprep-package
add_asr_node_states	add_asr_node_states
add_island_colonist	add_island_colonist
add_missing_species	add_missing_species
add_multi_missing_species	add_multi_missing_species
add_outgroup	add_outgroup
all_descendants_conspecific	all_descendants_conspecific
all_endemicity_status	all_endemicity_status
any_back_colonisation	any_back_colonisation
any_outgroup	any_outgroup
any_polyphyly	any_polyphyly
as_daisie_datatable	as_daisie_datatable
benchmark	benchmark
bind_colonist_to_tbl	bind_colonist_to_tbl
check_island_colonist	check_island_colonist
check_island_tbl	check_island_tbl
check_multi_island_tbl	check_multi_island_tbl
check_phylo_data	check_phylo_data
coccyzus_phylod	coccyzus_phylod
coccyzus_tree	GalapagosTrees
columbiformes_phylod	columbiformes_phylod
columbiformes_tree	GalapagosTrees
count_missing_species	count_missing_species
create_daisie_data	create_daisie_data
create_endemicity_status	create_endemicity_status
create_test_phylod	create_test_phylod
DAISIEprep	DAISIEprep-package
default_params_doc	default_params_doc
endemicity_to_sse_states	endemicity_to_sse_states
extract_asr_clade	extract_asr_clade
extract_biogeobears_ancestral_states_probs	extract_biogeobears_ancestral_states_probs
extract_clade_name	extract_clade_name
extract_endemic_clade	extract_endemic_clade
extract_endemic_singleton	extract_endemic_singleton
extract_island_species	extract_island_species
extract_multi_tip_species	extract_multi_tip_species
extract_nonendemic	extract_nonendemic
extract_nonendemic_forced	extract_nonendemic_forced
extract_species_asr	extract_species_asr
extract_species_min	extract_species_min
extract_stem_age	extract_stem_age
extract_stem_age_asr	extract_stem_age_asr
extract_stem_age_genus	extract_stem_age_genus
extract_stem_age_min	extract_stem_age_min
finches_phylod	finches_phylod
finches_tree	GalapagosTrees
GalapagosTrees	GalapagosTrees
get_branching_times	Island_colonist-accessors
get_branching_times,Island_colonist-method	Island_colonist-accessors
get_clade_name	Island_colonist-accessors
get_clade_name,Island_colonist-method	Island_colonist-accessors
get_clade_type	Island_colonist-accessors
get_clade_type,Island_colonist-method	Island_colonist-accessors
get_col_max_age	Island_colonist-accessors
get_col_max_age,Island_colonist-method	Island_colonist-accessors
get_col_time	Island_colonist-accessors
get_col_time,Island_colonist-method	Island_colonist-accessors
get_endemic_species	get_endemic_species
get_extracted_species	Island_tbl-accessors
get_extracted_species,Island_tbl-method	Island_tbl-accessors
get_island_tbl	Island_tbl-accessors
get_island_tbl,Island_tbl-method	Island_tbl-accessors
get_min_age	Island_colonist-accessors
get_min_age,Island_colonist-method	Island_colonist-accessors
get_missing_species	Island_colonist-accessors
get_missing_species,Island_colonist-method	Island_colonist-accessors
get_num_phylo_used	Island_tbl-accessors
get_num_phylo_used,Island_tbl-method	Island_tbl-accessors
get_species	Island_colonist-accessors
get_species,Island_colonist-method	Island_colonist-accessors
get_sse_tip_states	get_sse_tip_states
get_status	Island_colonist-accessors
get_status,Island_colonist-method	Island_colonist-accessors
island_colonist	island_colonist
Island_colonist-class	Island_colonist-class
island_tbl	island_tbl
Island_tbl-class	Island_tbl-class
is_back_colonisation	is_back_colonisation
is_duplicate_colonist	is_duplicate_colonist
is_identical_island_tbl	is_identical_island_tbl
is_multi_tip_species	is_multi_tip_species
mimus_phylod	mimus_phylod
mimus_tree	GalapagosTrees
multi_extract_island_species	multi_extract_island_species
multi_island_tbl	multi_island_tbl
Multi_island_tbl-class	Multi_island_tbl-class
myiarchus_phylod	myiarchus_phylod
myiarchus_tree	GalapagosTrees
plant_phylo	plant_phylo
plot_colonisation	plot_colonisation
plot_performance	plot_performance
plot_phylod	plot_phylod
plot_sensitivity	plot_sensitivity
progne_phylod	progne_phylod
progne_tree	GalapagosTrees
pyrocephalus_phylod	pyrocephalus_phylod
pyrocephalus_tree	GalapagosTrees
read_performance	read_performance
read_sensitivity	read_sensitivity
rm_duplicate_island_species	rm_duplicate_island_species
rm_island_colonist	rm_island_colonist
rm_multi_missing_species	rm_multi_missing_species
round_up	round_up
select_endemicity_status	select_endemicity_status
sensitivity	sensitivity
setophaga_phylod	setophaga_phylod
setophaga_tree	GalapagosTrees
set_branching_times<-	Island_colonist-accessors
set_branching_times<-,Island_colonist-method	Island_colonist-accessors
set_clade_name<-	Island_colonist-accessors
set_clade_name<-,Island_colonist-method	Island_colonist-accessors
set_clade_type<-	Island_colonist-accessors
set_clade_type<-,Island_colonist-method	Island_colonist-accessors
set_col_max_age<-	Island_colonist-accessors
set_col_max_age<-,Island_colonist-method	Island_colonist-accessors
set_col_time<-	Island_colonist-accessors
set_col_time<-,Island_colonist-method	Island_colonist-accessors
set_extracted_species<-	Island_tbl-accessors
set_extracted_species<-,Island_tbl-method	Island_tbl-accessors
set_island_tbl<-	Island_tbl-accessors
set_island_tbl<-,Island_tbl-method	Island_tbl-accessors
set_min_age<-	Island_colonist-accessors
set_min_age<-,Island_colonist-method	Island_colonist-accessors
set_missing_species<-	Island_colonist-accessors
set_missing_species<-,Island_colonist-method	Island_colonist-accessors
set_num_phylo_used<-	Island_tbl-accessors
set_num_phylo_used<-,Island_tbl-method	Island_tbl-accessors
set_species<-	Island_colonist-accessors
set_species<-,Island_colonist-method	Island_colonist-accessors
set_status<-	Island_colonist-accessors
set_status<-,Island_colonist-method	Island_colonist-accessors
sse_states_to_endemicity	sse_states_to_endemicity
translate_status	translate_status
unique_island_genera	unique_island_genera
write_biogeobears_input	write_biogeobears_input
write_newick_file	write_newick_file
write_phylip_biogeo_file	write_phylip_biogeo_file
