# Dealing with Binary Replicates

## Documentation for package ‘BinaryReplicates’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

average_scoring | Non-Bayesian scoring methods
BayesianFit | Fit the Bayesian model for Binary Replicates
bayesian_computations | Bayesian computations
bayesian_prevalence_estimate | Bayesian computations
bayesian_scoring | Bayesian computations
classify_with_scores | Classification based on a thresholding of the scores
classify_with_scores_cvEM | Perform classification on the scores for each fold of a cvEM object
credint | Bayesian computations
cvEM | Cross-validation for the EM algorithm
EMFit | Compute the _Maximum-A-Posteriori_ estimate with the EM algorithm
likelihood_scoring | Non-Bayesian scoring methods
mammography | A mammography dataset
mammography-datasets | A mammography dataset
MAP_scoring | Non-Bayesian scoring methods
median_scoring | Non-Bayesian scoring methods
non_bayesian_scoring | Non-Bayesian scoring methods
observed | A mammography dataset
periodontal | A periodontal dataset
predict_scores | Compute predictive Bayesian scores
prevalence_estimate | Compute the average-/median- or MAP-based prevalence estimates based on the scores