# Analysing RNA Splicing in Single-Cell RNA Sequencing Data

## Documentation for package ‘splikit’ version 2.3.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

find_variable_events | Calculate the Sum Deviance for Inclusion and Exclusion Matrices
find_variable_genes | Find Variable Genes Using Variance or Deviance-Based Metrics
get_pseudo_correlation | Compute Pseudo-Correlation Using Beta-Binomial Model
get_rowVar | Calculate Row-wise Variance for Dense or Sparse Matrices
get_silhouette_mean | Compute Average Silhouette Width with Logging
load_toy_M1_M2_object | Load the toy M1/M2 object
load_toy_SJ_object | Load the toy SJ object
make_eventdata_plus | make_eventdata_plus
make_gene_count | make_gene_count
make_junction_ab | make_junction_ab
make_m1 | make_m1
make_m2 | make_m2 (Integrated with Automatic Batching)
make_velo_count | Process Spliced and Unspliced Counts from Velocyto Outputs
plot_exclusive_junctions | Plot transcript-exclusive splice junctions
plot_exclusive_junctions_event | Plot transcript-exclusive splice junctions observed in eventdata
plot_exclusive_junctions_pdf | Multi-page PDF of transcript-exclusive junctions
print.splikit_junction_plot | Print method for splikit junction-plot results
splikit | Create a SplikitObject
SplikitObject | SplikitObject