.as_color_vector	dot-as_color_vector
.build_continuous_scale	dot-build_continuous_scale
.build_discrete_fill_for_direction	dot-build_discrete_fill_for_direction
.build_heatmap_col_fun	dot-build_heatmap_col_fun
.is_ggplot_scale	dot-is_ggplot_scale
aggregate_taxa_contributions	aggregate_taxa_contributions
build_design_matrix	build_design_matrix
calculate_abundance_stats	calculate_abundance_stats
calculate_log2_fold_change	calculate_log2_fold_change
calculate_pseudocount	calculate_pseudocount
calculate_rank_metric	calculate_rank_metric
calculate_smart_text_size	calculate_smart_text_size
color_themes	color_themes
compare_daa_results	compare_daa_results
compare_gsea_daa	compare_gsea_daa
compare_metagenome_results	compare_metagenome_results
create_dendrogram	create_dendrogram
create_empty_plot	create_empty_plot
create_gradient_colors	create_gradient_colors
create_heatmap_plot	create_heatmap_plot
create_legend_theme	create_legend_theme
create_network_plot	create_network_plot
create_pathway_class_theme	create_pathway_class_theme
daa_annotated_results_df	daa_annotated_results_df
daa_results_df	daa_results_df
data_utils	data_utils
ec_reference	ec_reference
format_pvalue_smart	format_pvalue_smart
generate_nested_colors	generate_nested_colors
get_available_themes	get_available_themes
get_color_theme	get_color_theme
get_significance_colors	get_significance_colors
get_significance_stars	get_significance_stars
ggpicrust2	ggpicrust2
gsea_pathway_annotation	gsea_pathway_annotation
import_MicrobiomeAnalyst_daa_results	import_MicrobiomeAnalyst_daa_results
kegg_abundance	kegg_abundance
kegg_pathway_reference	kegg_pathway_reference
ko2kegg_abundance	ko2kegg_abundance
ko_abundance	ko_abundance
ko_reference	ko_reference
ko_to_go_reference	ko_to_go_reference
ko_to_kegg_reference	ko_to_kegg_reference
legend_annotation_utils	legend_annotation_utils
metacyc_abundance	metacyc_abundance
metacyc_reference	metacyc_reference
metacyc_to_ec_reference	metacyc_to_ec_reference
metadata	metadata
pathway_annotation	pathway_annotation
pathway_daa	pathway_daa
pathway_errorbar	pathway_errorbar
pathway_errorbar_table	pathway_errorbar_table
pathway_gsea	pathway_gsea
pathway_heatmap	pathway_heatmap
pathway_pca	pathway_pca
pathway_ridgeplot	pathway_ridgeplot
pathway_volcano	pathway_volcano
prepare_gene_sets	prepare_gene_sets
preview_color_theme	preview_color_theme
read_contrib_file	read_contrib_file
read_pathway_contrib_file	read_pathway_contrib_file
read_strat_file	read_strat_file
require_column	require_column
resolve_annotation_overlaps	resolve_annotation_overlaps
run_fgsea	run_fgsea
run_limma_gsea	run_limma_gsea
safe_extract	safe_extract
smart_color_selection	smart_color_selection
taxa_contribution_bar	taxa_contribution_bar
taxa_contribution_heatmap	taxa_contribution_heatmap
validate_daa_results	validate_daa_results
validate_group_sizes	validate_group_sizes
visualize_gsea	visualize_gsea
