# Fast and Efficient (Automated) Analysis of Sparse Omics Data

## Documentation for package ‘OmicFlow’ version 1.6.0

- DESCRIPTION file.

## Help Pages

bray | Compute Bray-Curtis Dissimilarity from a Dense or Sparse Matrix.
canberra | Compute Canberra Dissimilarity from a from a Dense or Sparse Matrix.
colormap | Color map of a variable
column_exists | Checks if column exists in table
composition_plot | Compositional plot
cosine | Compute Cosine Dissimilarity from a Dense or Sparse Matrix.
diversity | Sparse implementation of Alpha Diversity Metrics
diversity_plot | Diversity plot
euclidean | Compute Euclidean Dissimilarity from a from a Dense or Sparse Matrix.
hill_taxa | Sparse implementation of Hill numbers
jaccard | Compute Jaccard Dissimilarity from a Dense or Sparse Matrix.
jsd | Compute Jensen-Shannon Divergence from a Dense or Sparse Matrix.
manhattan | Compute Manhattan Dissimilarity from a Dense or Sparse Matrix.
matrix_to_dtable | Converting a Matrix to data.table
metagenomics | Sub-class metagenomics
omics | Abstract omics class
ordination_plot | Ordination plot
pairwise_adonis | Pairwise adonis2 (PERMANOVA) computation
pairwise_anosim | Pairwise anosim (ANOSIM) computation
plot_pairwise_stats | Create pairwise stats plot
proteomics | Sub-class proteomics
unifrac | Compute UniFrac Dissimilarity from a Dense or Sparse Matrix.
volcano_plot | Volcano plot