Package: eDITH
Type: Package
Title: Model Transport of Environmental DNA in River Networks
Version: 1.1.0
Authors@R: 
    c(person("Luca", "Carraro", 
	email = "luca.carraro@hotmail.it", role = c("cre", "aut")),
		person("Florian", "Altermatt", role = c("aut")),
    person("University of Zurich", role = c("cph", "fnd")))
Description: Runs the eDITH (environmental DNA Integrating Transport 
  and Hydrology) model, which implements a mass balance of environmental DNA (eDNA) 
  transport at a river network scale coupled with a species distribution model 
  to obtain maps of species distribution. eDITH can work with both eDNA concentration 
  (e.g., obtained via quantitative polymerase chain reaction) or metabarcoding 
  (read count) data. Parameter estimation can be performed via Bayesian techniques 
  (via the 'BayesianTools' package) or optimization algorithms. An interface to the 
  'DHARMa' package for posterior predictive checks is provided. See Carraro and 
  Altermatt (2024) <doi:10.1111/2041-210X.14317> for a package introduction; 
  Carraro et al. (2018) <doi:10.1073/pnas.1813843115> and Carraro et al. (2020) 
  <doi:10.1038/s41467-020-17337-8> for methodological details.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 3.6)
Suggests: knitr, rmarkdown, bookdown
VignetteBuilder: knitr
URL: https://lucarraro.github.io/eDITH/,
        https://github.com/lucarraro/eDITH
BugReports: https://github.com/lucarraro/eDITH/issues
Imports: Rcpp (>= 1.0.10), OCNet (>= 1.1.0), rivnet (>= 0.4.2),
        BayesianTools, LaplacesDemon, DHARMa, terra, fields
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2025-09-12 08:50:42 UTC; lucac
Author: Luca Carraro [cre, aut],
  Florian Altermatt [aut],
  University of Zurich [cph, fnd]
Maintainer: Luca Carraro <luca.carraro@hotmail.it>
Repository: CRAN
Date/Publication: 2025-09-12 09:30:02 UTC
Built: R 4.5.0; aarch64-apple-darwin20; 2025-09-12 12:46:27 UTC; unix
Archs: eDITH.so.dSYM
