ViralEntropR-package	ViralEntropR-package
build_distance_matrix	build_distance_matrix
calculate_entropy	calculate_entropy
calculate_hellinger_matrix	calculate_hellinger_matrix
cluster_sites_by_entropy	cluster_sites_by_entropy
decode_aa_sequence	decode_aa_sequence
detect_changepoints_ecp	detect_changepoints_ecp
detect_changepoints_hdcp	detect_changepoints_hdcp
encode_aa_sequence	encode_aa_sequence
extract_fasta_countries	extract_fasta_countries
extract_fasta_dates	extract_fasta_dates
fasta_to_char_matrix	fasta_to_char_matrix
filter_ambiguous_sequences	filter_ambiguous_sequences
get_site_counts	get_site_counts
get_variants	get_variants
partition_time_windows	partition_time_windows
plot_entropy_trajectories	plot_entropy_trajectories
plot_site_class_trajectory	plot_site_class_trajectory
relabel_entropy_classes	relabel_entropy_classes
sarscov2_sample	sarscov2_sample
sarscov2_variants	sarscov2_variants
simulate_variant_evolution	simulate_variant_evolution
tabulate_site_evolution	tabulate_site_evolution
ViralEntropR	ViralEntropR-package
