Statistical Analysis of Ensemble Proximity Matrices

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Documentation for package ‘Proximum’ version 1.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as.dist.proximity	Dissimilarity induced by a proximity matrix
as.matrix.proximity	Proximity matrix of a tree ensemble
as.matrix.proximity_nystrom	Reconstruct a Nystrom approximation as a dense matrix
as.matrix.proximity_sparse	Densify a sparse proximity matrix
as.matrix.proximity_stream	A proximity that is never allocated
as_dissimilarity	Transform a proximity into a dissimilarity
as_proximity	Proximity matrix of a tree ensemble
as_proximity.e2tree	Proximity matrix of a tree ensemble
as_proximity.randomForest	Proximity matrix of a tree ensemble
as_proximity.ranger	Proximity matrix of a tree ensemble
autoplot.proximity	Visualise a proximity object
autoplot.proximity_nystrom	Visualise a proximity object
autoplot.proximity_sparse	Visualise a proximity object
autoplot.proximity_stability	Visualise a proximity object
autoplot.proximity_trees	Visualise a proximity object
cka	Centered kernel alignment between two proximity matrices
double_centre	Double centring of a squared dissimilarity matrix
embedding	The configuration a proximity matrix implies
embedding.default	The configuration a proximity matrix implies
embedding.proximity_nystrom	The configuration a proximity matrix implies
is_euclidean	Is a dissimilarity matrix Euclidean?
loans	A synthetic consumer loan portfolio
make_psd	Repair an indefinite proximity matrix
mantel_test	Mantel test between two proximity matrices
nystrom	Nystrom approximation of a proximity matrix
n_trees_required	How many trees does a stable proximity matrix need?
permanova	PERMANOVA on the dissimilarity induced by a proximity matrix
print.proximity	Proximity matrix of a tree ensemble
print.proximity_nystrom	Nystrom approximation of a proximity matrix
print.proximity_sparse	Sparse representation of a proximity matrix
print.proximity_stability	Agreement between replicate proximity matrices
print.proximity_stream	A proximity that is never allocated
print.proximity_trees	How many trees does a stable proximity matrix need?
print.summary.proximity	Diagnostics for a proximity matrix
print.summary.proximity_nystrom	Diagnostics for a Nystrom approximation
print.summary.proximity_sparse	Diagnostics for a sparse proximity matrix
protest	Procrustes comparison of two proximity matrices
proximity_stream	A proximity that is never allocated
rv_coefficient	Centered kernel alignment between two proximity matrices
sparsify	Sparse representation of a proximity matrix
stability	Agreement between replicate proximity matrices
summary.proximity	Diagnostics for a proximity matrix
summary.proximity_nystrom	Diagnostics for a Nystrom approximation
summary.proximity_sparse	Diagnostics for a sparse proximity matrix