| ci.curve | Confidence bands |
| c_helper | Contact rate function. |
| estimate.mle | Fit the Model |
| find_ends | Detect end of waves |
| find_starts | Detect start of waves |
| load_config | Load configuration file |
| log_lklh | The likelihood function |
| navigate_to_config | Navigate to the config file |
| plot_outputs | Plotting function |
| pred.curve | Epidemic Curve Model |
| ranges_to_waves | Utility function for range manipulation |
| re_predict | Demo of main functions |
| rt_empirical | Empirical estimate of R_t |
| serial.helper | Serial interval |
| waves_1d_list | Utility function for range manipulation |