Fragmentation Spectra Analysis (FSA)
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Documentation for package ‘IDSL.FSA’ version 1.2
Help Pages
| fragmentation_spectra_annotator | Fragmentation Spectra Annotator |
| FSA_aggregate | aggregation method for FSA |
| FSA_annotation_text_repel | FSA annotation text repel |
| FSA_dir.create | FSA_dir.create |
| FSA_FSdb_xlsxAnalyzer | FSA FSdb xlsx Analyzer |
| FSA_loadRdata | FSA loadRdata |
| FSA_locate_regex | FSA Locate regex |
| FSA_logRecorder | FSA logRecorder |
| FSA_message | FSA message |
| FSA_msp2Cytoscape | FSA Cytoscape Files Generator |
| FSA_msp_annotator | FSA msp annotator |
| FSA_plotFSdb2Spectra | plot FSdb to Spectra |
| FSA_R.aggregate | aggregate function for IDSL.FSA |
| FSA_SpectraSimilarity_xlsxAnalyzer | FSA SpectraSimilarity xlsx Analyzer |
| FSA_spectra_marker_generator | FSA Spectra Marker Generator |
| FSA_uniqueMSPblockTagger | FSA Unique MSP Block Tagger |
| FSA_uniqueMSPblockTaggerUntargeted | FSA_uniqueMSPblockTaggerUntargeted |
| FSA_workflow | FSA workflow |
| FSA_xlsxAnalyzer | FSA xlsx Analyzer |
| FSdb2msp | Fragmentation Spectra DataBase (FSDB) to MSP |
| FSdb2PeakXcolSubsetter | FSdb2PeakXcolSubsetter |
| FSdb2precursorType | Precursor Types from Fragmentation Spectra DataBase (FSDB) |
| FSdb_file_generator | FSdb file generator |
| FSdb_subsetter | FSdb subsetter |
| mgf2msp | MGF to MSP |
| msp2FSdb | msp to Fragmentation Spectra DataBase (FSDB) |
| msp2TrainingMatrix | msp to Fragmentation Spectra DataBase (FSDB) |
| mspPosNegSplitter | MSP Pos/Neg Splitter |
| plotFSdb2SpectraCore | plot spectra from FSdb core |
| spectral_entropy_calculator | Spectral Entropy Calculator |
| spectral_entropy_similarity_score | Spectral Entropy Calculator |
| spectra_1A1B_mixer | Mixer 1:1 spectra A and B |
| spectra_integrator | Spectra Integrator |
| spectra_ion_filter | Spectra Ion Filter |
| stackedSpectra | Example for a stacked spectra |
| UFSA_element_sorter | Element Sorter |
| UFSA_formula_vector_generator | Molecular Formula Vector Generator |
| UFSA_hill_molecular_formula_printer | Print Hill Molecular Formula |
| UFSA_ionization_pathway_deconvoluter | Ionization Pathway Deconvoluter |
| UFSA_precursorType_corrector | UFA Precursor Type Corrector |
| xlsx2msp | xlsx to MSP |