Data Package for 'pathfindR'
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Documentation for package ‘pathfindR.data’ version 2.1.0
Help Pages
| biocarta_descriptions | BioCarta Pathways - Descriptions |
| biocarta_genes | BioCarta Pathways - Gene Sets |
| cell_markers_descriptions | Human Cell Markers - Descriptions |
| cell_markers_gsets | Human Cell Markers - Gene Sets |
| example_active_snws | Example Active Subnetworks |
| example_comparison_output | Second Example Output for the pathfindR Enrichment Workflow (H.sapiens. - Rheumatoid Arthritis data) |
| example_custom_genesets_result | Custom Gene Set Enrichment Results |
| example_experiment_matrix | Example Experiment Matrix for pathfindR - Enriched Term Scoring |
| example_mmu_input | Example Input for Mus musculus - Myeloma Analysis |
| example_mmu_output | Example Output for Mus musculus - Myeloma Analysis |
| example_pathfindR_input | Example Input for the pathfindR Enrichment Workflow - Rheumatoid Arthritis (H.sapiens) |
| example_pathfindR_output | Example Output for the pathfindR Enrichment Workflow - Rheumatoid Arthritis |
| example_pathfindR_output_clustered | Example Output for the pathfindR Clustering Workflow - Rheumatoid Arthritis |
| go_all_genes | Gene Ontology - All Gene Ontology Gene Sets |
| kegg_descriptions | KEGG Pathways - Descriptions |
| kegg_genes | KEGG Pathways - Gene Sets |
| mmu_kegg_descriptions | Mus Musculus KEGG Pathways - Descriptions |
| mmu_kegg_genes | Mus Musculus KEGG Pathways - Gene Sets |
| pathfindR.data_updates | Table of Data for pathfindR |
| reactome_descriptions | Reactome Pathways - Descriptions |
| reactome_genes | Reactome Pathways - Gene Sets |