| microclass-package | Methods for 16S based taxonomic classification of prokaryotes |
| blastClassify16S | Classifying using BLAST |
| blastDbase16S | Building a BLAST database |
| KmerCount | K-mer counting |
| microclass | Methods for 16S based taxonomic classification of prokaryotes |
| multinomClassify | Classifying with a Multinomial model |
| multinomTrain | Training multinomial model |
| rdpClassify | Classifying with the RDP classifier |
| rdpTrain | Training the RDP classifier |
| setParallel | Set number of parallel threads |
| small.16S | A small example data set |
| taxMachine | Classifying 16S sequences |