EcoPhyloMapper

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Documentation for package ‘epm’ version 1.1.2

• DESCRIPTION file.

Help Pages

addLegend	addLegend
addPhylo	addPhylo
addTraits	addTraits
betadiv_disparity	Map change in morphological disparity
betadiv_phylogenetic	Map phylogenetic turnover in species communities
betadiv_taxonomic	Map turnover in species communities
calcMeanShape	Calculate mean shape per grid cell
coordsFromEpmGrid	Retrieve coordinates from epmGrid
createEPMgrid	Create epmGrid object
customBetaDiv	Custom beta diversity metrics
customGridMetric	Custom grid metrics
dropSpecies	Drop species from epmGrid
DRstat	Calculate the DR statistic
epm	EcoPhyloMapper (epm)
epm-example	Eco Phylo Mapper datasets
epmToPhyloComm	Convert epmGrid to community matrix
expandSpeciesCellList	Expand species list
extractFromEpmGrid	Extract from epmGrid
faithPD	Calculate Faith's Phylogenetic Diversity
generateOccurrenceMatrix	Convert epmGrid to community matrix
getExtentOfList	Get extent of list
getMultiMapRamp	Extract min and max for multiple epmGrids
getSpPartialDisparities	Partial Disparity
gridMetrics	Grid Metrics
identify.epmGrid	Interactively identify species in epmGrid
interactiveExtent	Interactively choose extent
plot.epmGrid	Plot epmGrid
plotDispersionField	Plot dispersion fields
plotSpRange	plot a single species' range
rasterToGrid	Convert raster to sf grid
read.epmGrid	Read a epmGrid object
reduceToCommonTaxa	Subset epmGrid to shared taxa
singleSpCellIndex	Identify single-species cells
spCountIndex	Identify cells that have a certain number of taxa
summarizeEpmGridList	Summarize lists of epmGrid objects
summary.epmGrid	epmGrid summary
tableFromEpmGrid	Data table from epmGrid
tamiasEPM	Eco Phylo Mapper datasets
tamiasPolyList	Eco Phylo Mapper datasets
tamiasTraits	Eco Phylo Mapper datasets
tamiasTree	Eco Phylo Mapper datasets
tamiasTreeSet	Eco Phylo Mapper datasets
write.epmGrid	Save epmGrid object
writeEpmSpatial	Write epmGrid Spatial Object to Disk