| Dif_stats | A function to calculate differentiation statistics and perform significance testing with a vcf file. |
| Dif_Stats_Map | A function to map differentiation statistics. |
| Div_stats | A function to estimate heterozygosity and the number of private alleles from a vcf file. |
| Div_Stats_Map | A function to map diversity statistics. |
| Fst_dat | A genetic differentiation matrix and locality information for each population. This data was generated by subsetting data of Farleigh et al., 2021. |
| Het_dat | A data frame of hypothetical heterozygosity data produced by Div_Stats. |
| HornedLizard_Pop | A population assignment data frame to be used in 'Div_stats' and 'Dif_stats'. |
| HornedLizard_VCF | A vcfR object to be used in 'Div_stats' and 'Dif_stats'. |
| Pairwise_heatmap | A function to plot a heatmap from a symmetric matrix. |
| Plot_ancestry | Plot an ancestry matrix and map of ancestry pie charts. |
| Q_dat | A list representing a q-matrix and the locality information associated with the qmatrix |