Variational Techniques in Epidemiology

Documentation for package ‘EpiInvert’ version 0.3.1

apply_delay	'apply_delay'
EpiIndicators	'EpiIndicators'
EpiIndicators_params	'EpiIndicators_params' function to select EpiIndicators parameters
EpiIndicators_plot	'EpiIndicators_plot'
EpiInvert	'EpiInvert' estimates the reproduction number Rt and a restored incidence curve from the original daily incidence curve and the serial interval distribution. EpiInvert also corrects the festive and weekly biases present in the registered daily incidence.
EpiInvertForecast	'EpiInvertForecast' computes a 28-day forecast of the restored incidence curve including a 95 using the weekly seasonality, from the forecasted restored incidence curve we also estimate a 28-day forecast of the original incidence curve.
EpiInvertForecast_plot	'EpiInvertForecast_plot'
EpiInvert_plot	'EpiInvert_plot'
festives	A dataset containing festive days in France, Germany, UK and the USA
incidence	A dataset containing daily incidence of COVID-19 for France, Germany, UK and the USA
incidence_weekly_aggregated	A dataset containing weekly aggregated incidence of COVID-19 for France, Germany, UK and the USA
joint_indicators_by_date	'joint_indicators_by_date'
owid	A dataset with COVID-19 indicators
restored_incidence_database	A dataset of restored daily incidence trend curves
select_params	'select_params' function to select EpiInvert parameters
si_distr_data	A dataset containing the values of a serial interval